RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 TEX30Q5JUR7 227 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 TPTE2P1Q5T6R2 138 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 C1orf185Q5T7R7 199 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 GPR107Q5VW38 600 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 MBOAT2Q6ZWT7 520 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 CBLN2Q8IUK8 224 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 APRG1Q8IVJ8 170 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 MICU2Q8IYU8 434 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 ZNF101Q8IZC7 436 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 OR52E2Q8NGJ4 325 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 LRRC29Q8WV35 223 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 JSRP1Q96MG2 331 aaPredicted RBP1.53□□□□□ -2.16
VPS13C-207ENST00000558919 COL21A1Q96P44 957 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 UCK2Q9BZX2 261 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 ZSCAN16Q9H4T2 348 aaPredicted RBP1.53□□□□□ -2.16
VPS13C-207ENST00000558919 DHX35Q9H5Z1 703 aaKnown RBP1.53□□□□□ -2.16
VPS13C-207ENST00000558919 TMEM38AQ9H6F2 299 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 RETNQ9HD89 108 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 CCNB1IP1Q9NPC3 277 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 DDX18Q9NVP1 670 aaKnown RBP1.53□□□□□ -2.16
VPS13C-207ENST00000558919 CLN6Q9NWW5 311 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 PTTG3PQ9NZH4 202 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 DUX4Q9UBX2 424 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 TBC1D24Q9ULP9 559 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 MMACHCQ9Y4U1 282 aa1.53□□□□□ -2.16
VPS13C-207ENST00000558919 THADAQ6YHU6 1953 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 WDR19Q8NEZ3 1342 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 SYNRGQ9UMZ2 1314 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 IGHV1-3A0A0C4DH29 117 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 M0R3G1 203 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 PAHP00439 452 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 HPRT1P00492 218 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 LHBP01229 141 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 HLA-HP01893 362 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 EIF4EP06730 217 aaKnown RBP1.52□□□□□ -2.17
VPS13C-207ENST00000558919 RAB4AP20338 218 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 CLDN18P56856 261 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 ILKQ13418 452 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 WDR43Q15061 677 aaKnown RBP eCLIP1.52□□□□□ -2.17
VPS13C-207ENST00000558919 CLEC2AQ6UVW9 174 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 C16orf47Q6ZP98 133 aaPredicted RBP1.52□□□□□ -2.17
VPS13C-207ENST00000558919 MRPL55Q7Z7F7 128 aaKnown RBP1.52□□□□□ -2.17
VPS13C-207ENST00000558919 NKAIN4Q8IVV8 208 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 KATNAL2Q8IYT4 538 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 C8orf31Q8N9H6 132 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 FAM184AQ8NB25 1140 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 C11orf72Q8NBR9 251 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 BPIFCQ8NFQ6 507 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 OR11H7Q8NGC8 314 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 OR56A4Q8NGH8 313 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 OR6Q1Q8NGQ2 317 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 APH1BQ8WW43 257 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 WDR34Q96EX3 536 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 OPALINQ96PE5 141 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 RHOXF2Q9BQY4 288 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 TM2D3Q9BRN9 247 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 SHANK2-AS3Q9BTD1 123 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 CHCHD7Q9BUK0 85 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 SLC7A5P2Q9GIP4 190 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 LYRM4Q9HD34 91 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 MRPL22Q9NWU5 206 aaKnown RBP1.52□□□□□ -2.17
VPS13C-207ENST00000558919 RHBDL2Q9NX52 303 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 PSME2Q9UL46 239 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 C2orf16Q68DN1 1984 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 BRCA1P38398 1863 aaKnown RBP1.52□□□□□ -2.17
VPS13C-207ENST00000558919 MYO16Q9Y6X6 1858 aa1.52□□□□□ -2.17
VPS13C-207ENST00000558919 FHOD3Q2V2M9 1422 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 TTC41PQ6P2S7 1318 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 UBN2Q6ZU65 1347 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 IGHV3-49A0A0A0MS15 119 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 IGKV1-8A0A0C4DH67 115 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 NCF1BA6NI72 391 aaPredicted RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 OR5H1A6NKK0 313 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 C17orf51A8MQB3 221 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 PDZK1P1A8MUH7 402 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 NCF1CA8MVU1 366 aaPredicted RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 GOLGA8TH3BQL2 631 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 H7C417 338 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 SLC9A3R1O14745 358 aaPredicted RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 CASC3O15234 703 aaKnown RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 CHMP2AO43633 222 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 CDC40O60508 579 aaKnown RBP eCLIP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 FCN3O75636 299 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 IGLV6-57P01721 117 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 CLTAP09496 248 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 CCT6AP40227 531 aaKnown RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 RBM34P42696 430 aaKnown RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 MAGEA1P43355 309 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 RPS5P46782 204 aaKnown RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 CCNG1P51959 295 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 ZNF121P58317 390 aaPredicted RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 RPL23P62829 140 aaKnown RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 RAD51Q06609 339 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 MAD2L1BPQ15013 274 aaPredicted RBP1.51□□□□□ -2.17
VPS13C-207ENST00000558919 ANGPTL8Q6UXH0 198 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 TMEM136Q6ZRR5 245 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 OTUD6AQ7L8S5 288 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 FAM71AQ8IYT1 594 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 CBR4Q8N4T8 237 aa1.51□□□□□ -2.17
VPS13C-207ENST00000558919 OR52E5Q8NH55 327 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms