RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 RAB14P61106 215 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 RIPPLY1Q0D2K3 151 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 ENDOGQ14249 297 aaKnown RBP15.88■□□□□ 0.13
VIM-209ENST00000544301 HLXQ14774 488 aaPredicted RBP15.88■□□□□ 0.13
VIM-209ENST00000544301 LY6G6FQ5SQ64 297 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 C1QTNF12Q5T7M4 302 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 C17orf107Q6ZR85 190 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 FOXL2NBQ6ZUU3 175 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 OR2W3Q7Z3T1 314 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 TMEM123Q8N131 208 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 TMEM104Q8NE00 496 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 OR9K2Q8NGE7 335 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 OR14K1Q8NGZ2 314 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 MRGPRFQ96AM1 343 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 FXYD6Q9H0Q3 95 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 NELFAQ9H3P2 528 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 SSX5O60225 188 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 DHRS2Q13268 280 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 TMUB2Q71RG4 321 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 NAA40Q86UY6 237 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 DTWD2Q8NBA8 298 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 NABP1Q96AH0 204 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 IFT46Q9NQC8 304 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 FBXO4Q9UKT5 387 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 KCNK7Q9Y2U2 307 aa15.88■□□□□ 0.13
VIM-209ENST00000544301 A0A0J9YW62 118 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 CBR3O75828 277 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 CHRM2P08172 466 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 HCKP08631 526 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 CASRP41180 1078 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 CSNK2A1P68400 391 aaPredicted RBP15.87■□□□□ 0.13
VIM-209ENST00000544301 NHLRC3Q5JS37 347 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 SFRP5Q5T4F7 317 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 COMMD7Q86VX2 200 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 ARMC10Q8N2F6 343 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 GJC3Q8NFK1 279 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 STEAP2Q8NFT2 490 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 PGAM5Q96HS1 289 aa15.87■□□□□ 0.13
VIM-209ENST00000544301 IGKV1-9A0A0C4DH69 117 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 TNFSF11O14788 317 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 CDC14BO60729 498 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 MPIG6BO95866 241 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 IGLV3-1P01715 115 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 HRH1P35367 487 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 GMFBP60983 142 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 RAC1P63000 192 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 ZMYND11Q15326 602 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 TOR2AQ5JU69 321 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 CLVS2Q5SYC1 327 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 SLC23A3Q6PIS1 610 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 SLC25A42Q86VD7 318 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 ZIC4Q8N9L1 334 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 KCNG3Q8TAE7 436 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 SSC4DQ8WTU2 575 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 LYZL4Q96KX0 146 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 KCNN3Q9UGI6 736 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 PLEKHA6Q9Y2H5 1048 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 COL6A3P12111 3177 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 OR5H15A6NDH6 313 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 DHHO43323 396 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 CD96P40200 585 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 ZXDAP98168 799 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 SORDQ00796 357 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 C1orf210Q8IVY1 113 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 MARVELD3Q96A59 401 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 TMEM41AQ96HV5 264 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 PIGQQ9BRB3 760 aa15.86■□□□□ 0.13
VIM-209ENST00000544301 NCOA6Q14686 2063 aaPredicted RBP15.86■□□□□ 0.13
VIM-209ENST00000544301 LOC100509620A0A075B734 347 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 TUBAL3A6NHL2 446 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 SOCS1O15524 211 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 PPP3CBP16298 524 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 HIST1H3AP68431 136 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 RSPO1Q2MKA7 263 aaPredicted RBP15.85■□□□□ 0.13
VIM-209ENST00000544301 PLAC9Q5JTB6 97 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 HIST2H3PS2Q5TEC6 136 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 HIST2H3AQ71DI3 136 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 LRRC18Q8N456 261 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 ZDHHC22Q8N966 263 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 RBM24Q9BX46 236 aaKnown RBP15.85■□□□□ 0.13
VIM-209ENST00000544301 SRXN1Q9BYN0 137 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 ARL6Q9H0F7 186 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 BANF2Q9H503 90 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 FOXD3Q9UJU5 478 aaPredicted RBP15.85■□□□□ 0.13
VIM-209ENST00000544301 B4E171 279 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 F5H5K5 113 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 HLA-AP01891 365 aaKnown RBP15.85■□□□□ 0.13
VIM-209ENST00000544301 LIPCP11150 499 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 ZBTB25P24278 435 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 CD34P28906 385 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 TSPAN7P41732 249 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 SUCLG1P53597 346 aaKnown RBP15.85■□□□□ 0.13
VIM-209ENST00000544301 RAB3CQ96E17 227 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 LIN37Q96GY3 246 aaPredicted RBP15.85■□□□□ 0.13
VIM-209ENST00000544301 GPER1Q99527 375 aa15.85■□□□□ 0.13
VIM-209ENST00000544301 ZNF230Q9UIE0 474 aaPredicted RBP15.85■□□□□ 0.13
VIM-209ENST00000544301 SDK2Q58EX2 2172 aa15.84■□□□□ 0.13
VIM-209ENST00000544301 TRAV14DV4A0A0A6YYC5 116 aa15.84■□□□□ 0.13
VIM-209ENST00000544301 A0A0G2JMM0 328 aa15.84■□□□□ 0.13
VIM-209ENST00000544301 A0A1W2PP11 408 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms