RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 VRK1Q99986 396 aaPredicted RBP12.39□□□□□ -0.43
TNFRSF1A-216ENST00000543995 REPIN1Q9BWE0 567 aaKnown RBP12.39□□□□□ -0.43
TNFRSF1A-216ENST00000543995 DUSP21Q9H596 190 aa12.39□□□□□ -0.43
TNFRSF1A-216ENST00000543995 SLC22A13Q9Y226 551 aa12.39□□□□□ -0.43
TNFRSF1A-216ENST00000543995 A0A0U1RQV5 110 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TTRP02766 147 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 NAT2P11245 290 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TMEM255AQ5JRV8 349 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 WDR38Q5JTN6 314 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ELMOD2Q8IZ81 293 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 OR52N1Q8NH53 320 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 OR51E1Q8TCB6 317 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 HAVCR2Q8TDQ0 301 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 SPSB4Q96A44 273 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 MS4A5Q9H3V2 200 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 GPR84Q9NQS5 396 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 CYSLTR2Q9NS75 346 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ZNF391Q9UJN7 358 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 FBN2P35556 2912 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ARFGEF3Q5TH69 2177 aa12.38□□□□□ -0.43
TNFRSF1A-216ENST00000543995 IQCF6A8MYZ5 107 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ERCC1P07992 297 aaPredicted RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 LIPAP38571 399 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 PPOXP50336 477 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 FAM3AP98173 230 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ZMAT1Q5H9K5 638 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 KLBQ86Z14 1044 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 PRSS35Q8N3Z0 413 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 NANOGP1Q8N7R0 232 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 OR2G2Q8NGZ5 317 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 IGFBPL1Q8WX77 278 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 NINJ1Q92982 152 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 FAM71F1Q96KD3 344 aaPredicted RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 MND1Q9BWT6 205 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 CDCA4Q9BXL8 241 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 YTHDF1Q9BYJ9 559 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TPK1Q9H3S4 243 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 MSL2Q9HCI7 577 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 FRRS1LQ9P0K9 344 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 CGGBP1Q9UFW8 167 aaPredicted RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 AKAP6Q13023 2319 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 hCG_38984A0A1B0GV85 526 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 CD300LBA8K4G0 201 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 E9PI62 339 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 OVOL3O00110 214 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 P2RY10O00398 339 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 MTRF1O75570 445 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 MT-ND2P03891 347 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 GSK3AP49840 483 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ZNF81P51508 661 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 GTF2A1P52655 376 aaPredicted RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 WNT4P56705 351 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 NANOS3P60323 173 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 GABARAPL2P60520 117 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ALKBH1Q13686 389 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 RNLSQ5VYX0 342 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 FDX2Q6P4F2 183 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 PRSS48Q7RTY5 328 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ZCCHC24Q8N2G6 241 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 OR8G5Q8NG78 346 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 OR56B2PQ8NGI1 322 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TRMT61AQ96FX7 289 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 LYZL4Q96KX0 146 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 RAB1BQ9H0U4 201 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TRIM36Q9NQ86 728 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 BABAM2Q9NXR7 383 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 LRCH1Q9Y2L9 728 aa12.37□□□□□ -0.43
TNFRSF1A-216ENST00000543995 LRBAP50851 2863 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TRBV2A0A0J9YWF9 115 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 A0A1B0GVI7 797 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 H3BSH0 61 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 H7C417 338 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 SPRY3O43610 288 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 UBCP0CG48 685 aaKnown RBP12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 DDOSTP39656 456 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 KIR3DL2P43630 455 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TGM4P49221 684 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 MMP15P51511 669 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 MED22Q15528 200 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 DEFB113Q30KQ7 82 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 CCDC58Q4VC31 144 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 GTF3AQ92664 365 aaKnown RBP12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 RNF166Q96A37 237 aaPredicted RBP12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 PERPQ96FX8 193 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 SOX7Q9BT81 388 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 COMMD4Q9H0A8 199 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TMEM100Q9NV29 134 aa12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 BEX4Q9NWD9 120 aaPredicted RBP12.36□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ZSCAN5BA6NJL1 495 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 ANKRD30BLA7E2S9 258 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 C17orf100A8MU93 164 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TPD52L2O43399 206 aaKnown RBP12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 SYT7O43581 403 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 LILRA1O75019 489 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 DHRS3O75911 302 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 IGLV3-1P01715 115 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 MAP2K3P46734 347 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 CCR9P51686 369 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 OR8B8Q15620 311 aa12.35□□□□□ -0.43
TNFRSF1A-216ENST00000543995 TMEM244Q5VVB8 128 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms