RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 AKR7A2O43488 359 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 SSNA1O43805 119 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 CD74P04233 296 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 VSIG8P0DPA2 414 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 GTF2F2P13984 249 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 CYB561P49447 251 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 ZNF260Q3ZCT1 412 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 TOR2AQ5JU69 321 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 SHEQ5VZ18 495 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 RAB12Q6IQ22 244 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 ABHD12BQ7Z5M8 362 aaPredicted RBP12.13□□□□□ -0.47
RTN3-210ENST00000540798 GABRG1Q8N1C3 465 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 OR11H4Q8NGC9 324 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 OR13C9Q8NGT0 318 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 FAM117AQ9C073 453 aa12.13□□□□□ -0.47
RTN3-210ENST00000540798 CCDC187A0A096LP49 1063 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 PINLYPA6NC86 204 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 CD3DP04234 171 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 SLC2A1P11166 492 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 ZNF20P17024 532 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 ANXA7P20073 488 aaKnown RBP12.12□□□□□ -0.47
RTN3-210ENST00000540798 CNR1P21554 472 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 GSK3AP49840 483 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 GFRA1P56159 465 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 TAS2R19P59542 299 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 MRPS34P82930 218 aaKnown RBP12.12□□□□□ -0.47
RTN3-210ENST00000540798 STEAP1BQ6NZ63 245 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 ZNF627Q7L945 461 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 OR14L1PQ8NHC6 308 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 ADAMTS17Q8TE56 1095 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 C1orf147Q96MC9 270 aaPredicted RBP12.12□□□□□ -0.47
RTN3-210ENST00000540798 GPR137Q96N19 417 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 SEC22CQ9BRL7 303 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 SCP2D1Q9UJQ7 156 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 A0A0U1RQV5 110 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 VSIG10L2P0DP72 767 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 ABOP16442 354 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 NTF4P34130 210 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 CLDN15P56746 228 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 SNRPD2P62316 118 aaKnown RBP12.12□□□□□ -0.47
RTN3-210ENST00000540798 FAM27BQ5VT28 67 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 ZNF782Q6ZMW2 699 aaPredicted RBP12.12□□□□□ -0.47
RTN3-210ENST00000540798 ZNF283Q8N7M2 679 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 LRRC20Q8TCA0 184 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 LYZL4Q96KX0 146 aa12.12□□□□□ -0.47
RTN3-210ENST00000540798 FAM57BQ71RH2 274 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 NLRC3Q7RTR2 1065 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 OR2W3Q7Z3T1 314 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 GRPEL2Q8TAA5 225 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 V9GYS6 101 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 C5orf63A6NC05 138 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 METTL21EPA6NDL7 271 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 MEIS3P1A6NDR6 274 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 SCGNO76038 276 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 ITGB2P05107 769 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 AVPR2P30518 371 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 ZNF93P35789 620 aaPredicted RBP12.11□□□□□ -0.47
RTN3-210ENST00000540798 CBX5P45973 191 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 CARD18P57730 90 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 RNF144BQ7Z419 303 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 OR51S1Q8NGJ8 323 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 GINS4Q9BRT9 223 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 KLK13Q9UKR3 277 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 ELF5Q9UKW6 265 aaPredicted RBP12.11□□□□□ -0.47
RTN3-210ENST00000540798 MT-CO3P00414 261 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 ZNF735P0CB33 412 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 GUCA1AP43080 201 aaPredicted RBP12.11□□□□□ -0.47
RTN3-210ENST00000540798 ZNF84P51523 738 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 CRIP3Q6Q6R5 217 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 OR2V1Q8NHB1 315 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 FAM46BQ96A09 425 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 ZNF837Q96EG3 531 aaPredicted RBP12.11□□□□□ -0.47
RTN3-210ENST00000540798 THOC3Q96J01 351 aaKnown RBP12.11□□□□□ -0.47
RTN3-210ENST00000540798 ULBP2Q9BZM5 246 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 GPN1Q9HCN4 374 aaPredicted RBP12.11□□□□□ -0.47
RTN3-210ENST00000540798 MYEF2Q9P2K5 600 aaKnown RBP12.11□□□□□ -0.47
RTN3-210ENST00000540798 MGAT4AQ9UM21 535 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 HSPB11Q9Y547 144 aa12.11□□□□□ -0.47
RTN3-210ENST00000540798 OR5H15A6NDH6 313 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 CREBL2O60519 120 aaPredicted RBP12.1□□□□□ -0.47
RTN3-210ENST00000540798 NEURL1O76050 574 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 ZNF250P15622 560 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 DLSTP36957 453 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 ZNF431Q8TF32 576 aaPredicted RBP12.1□□□□□ -0.47
RTN3-210ENST00000540798 FBXO17Q96EF6 278 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 USB1Q9BQ65 265 aaKnown RBP12.1□□□□□ -0.47
RTN3-210ENST00000540798 ALX4Q9H161 411 aaPredicted RBP12.1□□□□□ -0.47
RTN3-210ENST00000540798 PIPOXQ9P0Z9 390 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 IGKV1-9A0A0C4DH69 117 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 OR2A4O95047 310 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 MPZP25189 248 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 KRTAP27-1Q3LI81 207 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 CCDC157Q569K6 752 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 WIPI1Q5MNZ9 446 aaPredicted RBP12.1□□□□□ -0.47
RTN3-210ENST00000540798 GPR137CQ8N3F9 429 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 ACBD4Q8NC06 268 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 PCNPQ8WW12 178 aaKnown RBP12.1□□□□□ -0.47
RTN3-210ENST00000540798 SLC39A7Q92504 469 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 OR2A7Q96R45 310 aa12.1□□□□□ -0.47
RTN3-210ENST00000540798 RBM24Q9BX46 236 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms