RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 C16orf95Q9H693 158 aa11.2□□□□□ -0.62
SS18-204ENST00000539244 DVL1O14640 695 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 IDH3BO43837 385 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 GYPAP02724 150 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 COX4I1P13073 169 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 NCK1P16333 377 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 ANOS1P23352 680 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 ARF6P62330 175 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 MZT1Q08AG7 82 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 DBPQ10586 325 aaPredicted RBP11.19□□□□□ -0.62
SS18-204ENST00000539244 SF3A3Q12874 501 aaKnown RBP eCLIP11.19□□□□□ -0.624e-6■■■■□ 22.2
SS18-204ENST00000539244 CDONQ4KMG0 1287 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 DRAM2Q6UX65 266 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 Q6ZSV7 163 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 BOLLQ8N9W6 283 aaKnown RBP11.19□□□□□ -0.62
SS18-204ENST00000539244 LY6G5BQ8NDX9 201 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 NPRL2Q8WTW4 380 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 KCTD14Q9BQ13 255 aaPredicted RBP11.19□□□□□ -0.62
SS18-204ENST00000539244 RASSF4Q9H2L5 321 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 OPA3Q9H6K4 179 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 EFCAB1Q9HAE3 211 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 DCAF13Q9NV06 445 aaKnown RBP11.19□□□□□ -0.62
SS18-204ENST00000539244 C1orf123Q9NWV4 160 aa11.19□□□□□ -0.62
SS18-204ENST00000539244 RPUSD1Q9UJJ7 312 aaKnown RBP11.19□□□□□ -0.62
SS18-204ENST00000539244 SAMD4AQ9UPU9 718 aaKnown RBP11.19□□□□□ -0.62
SS18-204ENST00000539244 A0A1B0GVI7 797 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 GGT3PA6NGU5 568 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 OR10H3O60404 316 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 TSPAN9O75954 239 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 DIRAS1O95057 198 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 TSPAN15O95858 294 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 HLA-DQA2P01906 255 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 SMIM11AP58511 58 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 GLYATL3Q5SZD4 288 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 ZNF826PQ6ZT77 177 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 FAM86B1Q8N7N1 296 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 SCCPDHQ8NBX0 429 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 SDR9C7Q8NEX9 313 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 OR52J3Q8NH60 311 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 OR2AE1Q8NHA4 323 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 IFT27Q9BW83 186 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 CNTD2Q9H8S5 307 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 TCF7L1Q9HCS4 588 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 ZNRD1Q9P1U0 126 aa11.18□□□□□ -0.62
SS18-204ENST00000539244 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.17□□□□□ -0.62
SS18-204ENST00000539244 C5orf63A6NC05 138 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 BHLHE40O14503 412 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 SEMG1P04279 462 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 MUC1P15941 1255 aaPredicted RBP11.17□□□□□ -0.62
SS18-204ENST00000539244 ZNF823P16415 610 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 NOS3P29474 1203 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 DDOSTP39656 456 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 GSSP48637 474 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 KRT72Q14CN4 511 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 GLYATQ6IB77 296 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 VMO1Q7Z5L0 202 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 C11orf53Q8IXP5 236 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 OR56B2PQ8NGI1 322 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 SPSB4Q96A44 273 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 DDOQ99489 341 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 FN3KQ9H479 309 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 RNPEPL1Q9HAU8 725 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 C14orf119Q9NWQ9 140 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 VPREB3Q9UKI3 123 aa11.17□□□□□ -0.62
SS18-204ENST00000539244 CAB39Q9Y376 341 aaPredicted RBP11.17□□□□□ -0.62
SS18-204ENST00000539244 hCG_1807616A0A1W2PRN6 198 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 A6NLC8 198 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 GPR37O15354 613 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 GADD45GO95257 159 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 GRPP07492 148 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 FBP1P09467 338 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 H2AFXP16104 143 aaPredicted RBP11.16□□□□□ -0.62
SS18-204ENST00000539244 RPS27P42677 84 aaKnown RBP11.16□□□□□ -0.62
SS18-204ENST00000539244 NUDT2P50583 147 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.16□□□□□ -0.62
SS18-204ENST00000539244 PCK2Q16822 640 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 C2orf68Q2NKX9 166 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 DHRS7BQ6IAN0 325 aaPredicted RBP11.16□□□□□ -0.62
SS18-204ENST00000539244 ZDHHC21Q8IVQ6 265 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 OR4C15Q8NGM1 316 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 ST8SIA4Q92187 359 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 CCDC134Q9H6E4 229 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 GORASP2Q9H8Y8 452 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 CD300AQ9UGN4 299 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 FAM96BQ9Y3D0 163 aa11.16□□□□□ -0.62
SS18-204ENST00000539244 TET2Q6N021 2002 aaPredicted RBP11.15□□□□□ -0.62
SS18-204ENST00000539244 A0A1B0GW55 424 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.15□□□□□ -0.62
SS18-204ENST00000539244 XRCC2O43543 280 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 SASH3O75995 380 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DUX4L2P0CJ85 424 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DUX4L3P0CJ86 424 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DUX4L4P0CJ87 422 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DUX4L5P0CJ88 424 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DUX4L6P0CJ89 424 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DUX4L7P0CJ90 424 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 PSKH1P11801 424 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 GRK5P34947 590 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 TGFBR2P37173 567 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 IFNGR2P38484 337 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms