RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PSMG3Q9BT73 122 aaPredicted RBP4.88□□□□□ -1.63
CD44-236ENST00000533222 GABARAPL3Q9BY60 117 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 WDR55Q9H6Y2 383 aaPredicted RBP4.88□□□□□ -1.63
CD44-236ENST00000533222 RAB18Q9NP72 206 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 HCFC1R1Q9NWW0 138 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 NDUFB11Q9NX14 153 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 TAS2R8Q9NYW2 309 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 TAS2R5Q9NYW4 299 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 MTCH1Q9NZJ7 389 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 MARCOQ9UEW3 520 aaPredicted RBP4.88□□□□□ -1.63
CD44-236ENST00000533222 RNF150Q9ULK6 438 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 FOXJ3Q9UPW0 622 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 MEMO1Q9Y316 297 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 MRPS16Q9Y3D3 137 aaKnown RBP4.88□□□□□ -1.63
CD44-236ENST00000533222 PKD1L3Q7Z443 1732 aa4.88□□□□□ -1.63
CD44-236ENST00000533222 KANTRA0A1W2PQU2 76 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TMEM150BA6NC51 233 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 ZAR1LA6NP61 321 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 LINC00473A8K010 186 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HS3ST1O14792 307 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 MPPED1O15442 326 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 PDE6DO43924 150 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 OR7C2O60412 319 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BKO60814 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 LRP3O75074 770 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 YIF1AO95070 293 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 SIX6O95475 246 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 DDAH2O95865 285 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 CD8AP01732 235 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 SEMG1P04279 462 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 ALDOBP05062 364 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BJP06899 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 DCNP07585 359 aaKnown RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 PPIAL4GP0DN37 164 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 GOT1P17174 413 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 CEBPBP17676 345 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TPSB2P20231 275 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 USF1P22415 310 aaPredicted RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BOP23527 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 CXCR1P25024 350 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 CHATP28329 748 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BBP33778 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 BTCP35070 178 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 SNCAP37840 140 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 AVPR1BP47901 424 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 SOX2P48431 317 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 ZNF140P52738 457 aaPredicted RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 NXPH1P58417 271 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BDP58876 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 CKS1BP61024 79 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BCP62807 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 MRPS34P82930 218 aaKnown RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 BDH1Q02338 343 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 EGR4Q05215 589 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 ARHGAP1Q07960 439 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 SIGLEC14Q08ET2 396 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 MLLT11Q13015 90 aaPredicted RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 ITPK1Q13572 414 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HTR4Q13639 388 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 GPR18Q14330 331 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TPSAB1Q15661 275 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST2H2BEQ16778 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 C22orf42Q6IC83 251 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 WBP2NLQ6ICG8 309 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TMPPEQ6ZT21 453 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 MON1BQ7L1V2 547 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TRMT1LQ7Z2T5 733 aaKnown RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 SLC35E3Q7Z769 313 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 CTU1Q7Z7A3 348 aaKnown RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 SCD5Q86SK9 330 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 ACOT1Q86TX2 421 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TMPRSS12Q86WS5 348 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 APOBEC3FQ8IUX4 373 aaKnown RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 C4orf19Q8IY42 314 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 CMTM8Q8IZV2 173 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 LRRC75A-AS1Q8N1F1 130 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 RNF149Q8NC42 400 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TSTD1Q8NFU3 115 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 OR5AU1Q8NGC0 362 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 OR52L1Q8NGH7 329 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 OR52E1Q8NGJ3 308 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 OR1L6Q8NGR2 347 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 OR10X1Q8NGY0 326 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 OR5AK2Q8NH90 309 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 OR5K2Q8NHB8 316 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 LYPD6BQ8NI32 183 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 NUDCD2Q8WVJ2 157 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TMEM239Q8WW34 195 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BHQ93079 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 TMEM18Q96B42 140 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 DAZAP1Q96EP5 407 aaKnown RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 C16orf58Q96GQ5 468 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 PANX1Q96RD7 426 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 DDOQ99489 341 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 MGLLQ99685 303 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BNQ99877 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 HIST1H2BMQ99879 126 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 SLC25A31Q9H0C2 315 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 METTL17Q9H7H0 456 aaPredicted RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms