RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DEFB112Q30KQ8 113 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 PRR31Q5SQ13 230 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 GLYATL3Q5SZD4 288 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 RASSF6Q6ZTQ3 369 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 PNLDC1Q8NA58 520 aaKnown RBP12.27□□□□□ -0.45
VPS28-215ENST00000531924 AQP11Q8NBQ7 271 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 SLC37A3Q8NCC5 494 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 OR8S1Q8NH09 359 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 TMIGD2Q96BF3 282 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 SLAMF6Q96DU3 332 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 KCNJ15Q99712 375 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 TRIM15Q9C019 465 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 ZNF696Q9H7X3 374 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 SP140LQ9H930 580 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 ARL8BQ9NVJ2 186 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 IL20Q9NYY1 176 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 BAIAP2Q9UQB8 552 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 LYVE1Q9Y5Y7 322 aa12.27□□□□□ -0.45
VPS28-215ENST00000531924 MGAM2Q2M2H8 2515 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 MDFIC2A0A1B0GVS7 189 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 OOEPA6NGQ2 149 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 RIIAD1A6NNX1 92 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 P2RY10O00398 339 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 TBX1O43435 398 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 XRCC2O43543 280 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 TOX4O94842 621 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 GASTP01350 101 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 ANXA2P07355 339 aaKnown RBP12.26□□□□□ -0.45
VPS28-215ENST00000531924 SLC2A1P11166 492 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 HSD11B1P28845 292 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 DDOSTP39656 456 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 PSMB10P40306 273 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 HMGA2P52926 109 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 TIGD6Q17RP2 521 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 METTL11BQ5VVY1 283 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 ZNF841Q6ZN19 808 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 ZNF511Q8NB15 262 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 OR2T33Q8NG76 320 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 OR56B2PQ8NGI1 322 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 DACT3Q96B18 629 aaPredicted RBP12.26□□□□□ -0.45
VPS28-215ENST00000531924 OTULINQ96BN8 352 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 BTBD10Q9BSF8 475 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 REEP1Q9H902 201 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 NOX4Q9NPH5 578 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 COMMD3-BMI1R4GMX3 469 aa12.26□□□□□ -0.45
VPS28-215ENST00000531924 SRRM5B3KS81 715 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 ZNF879B4DU55 563 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 C22orf46C9J442 243 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 ZNF878C9JN71 531 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 APOC1P02654 83 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 GYPAP02724 150 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 GYPBP06028 91 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 ZNF3P17036 446 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 OMGP23515 440 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 SLC25A1P53007 311 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 GRB2P62993 217 aaKnown RBP12.25□□□□□ -0.45
VPS28-215ENST00000531924 GNGT1P63211 74 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 CRMP1Q14194 572 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 LYPD4Q6UWN0 246 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 GATAD2BQ8WXI9 593 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 FAM71F1Q96KD3 344 aaPredicted RBP12.25□□□□□ -0.45
VPS28-215ENST00000531924 ACTR3BQ9P1U1 418 aa12.25□□□□□ -0.45
VPS28-215ENST00000531924 SAMHD1Q9Y3Z3 626 aaKnown RBP12.25□□□□□ -0.45
VPS28-215ENST00000531924 FAM181BA6NEQ2 426 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 WIPF1O43516 503 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 SOX14O95416 240 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 PTBP3O95758 552 aaKnown RBP12.24□□□□□ -0.45
VPS28-215ENST00000531924 SFTPBP07988 381 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 SPI1P17947 270 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 MDKP21741 143 aaPredicted RBP12.24□□□□□ -0.45
VPS28-215ENST00000531924 CFL1P23528 166 aaKnown RBP12.24□□□□□ -0.45
VPS28-215ENST00000531924 OTX1P32242 354 aaPredicted RBP12.24□□□□□ -0.45
VPS28-215ENST00000531924 CFHR2P36980 270 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 GNALP38405 381 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 CX3CR1P49238 355 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 EIF2B1Q14232 305 aaKnown RBP12.24□□□□□ -0.45
VPS28-215ENST00000531924 FAM98BQ52LJ0 330 aaKnown RBP12.24□□□□□ -0.45
VPS28-215ENST00000531924 ZNF362Q5T0B9 420 aaPredicted RBP12.24□□□□□ -0.45
VPS28-215ENST00000531924 RUSC1-AS1Q66K80 236 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 C17orf107Q6ZR85 190 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 ZNF826PQ6ZT77 177 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 DHFR2Q86XF0 187 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 OR8D4Q8NGM9 314 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 OR4F5Q8NH21 305 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 ZNRF4Q8WWF5 429 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 WDFY2Q96P53 400 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 DDOQ99489 341 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 RASSF4Q9H2L5 321 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 TOR3AQ9H497 397 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 MARCH7Q9H992 704 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 BEX1Q9HBH7 125 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 CTSZQ9UBR2 303 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 U3KQV3 271 aa12.24□□□□□ -0.45
VPS28-215ENST00000531924 MEGF8Q7Z7M0 2845 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 A0A1B0GUS0 222 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 DHRS12A0PJE2 317 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 C5orf63A6NC05 138 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 ECDO95905 644 aaPredicted RBP12.23□□□□□ -0.45
VPS28-215ENST00000531924 KNG1P01042 644 aa12.23□□□□□ -0.45
VPS28-215ENST00000531924 ATP6V1B2P21281 511 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms