RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 GP1BAP07359 652 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 H2AFB1P0C5Y9 115 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 TBPP20226 339 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 ANOS1P23352 680 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 FOXK1P85037 733 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 MYBPHQ13203 477 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 PAN3Q58A45 887 aaKnown RBP17.07■□□□□ 0.32
VPS28-213ENST00000530983 THAP6Q8TBB0 222 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 LPAR5Q9H1C0 372 aa17.07■□□□□ 0.32
VPS28-213ENST00000530983 SDK1Q7Z5N4 2213 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 EEF1E1-BLOC1S5C9J1V9 151 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 KCNAB3O43448 404 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 IFNA6P05013 189 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 GLB1P16278 677 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 ABOP16442 354 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 HOXA1P49639 335 aaPredicted RBP17.06■□□□□ 0.32
VPS28-213ENST00000530983 AKR1D1P51857 326 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 EMP2P54851 167 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 INPP5JQ15735 1006 aaPredicted RBP17.06■□□□□ 0.32
VPS28-213ENST00000530983 TMEM17Q86X19 198 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 HOGA1Q86XE5 327 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 ZNF101Q8IZC7 436 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 SLC38A9Q8NBW4 561 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 TMEM104Q8NE00 496 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 NUBPLQ8TB37 319 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 MARCH1Q8TCQ1 289 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 RNF138Q8WVD3 245 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 NARS2Q96I59 477 aaKnown RBP17.06■□□□□ 0.32
VPS28-213ENST00000530983 C1orf147Q96MC9 270 aaPredicted RBP17.06■□□□□ 0.32
VPS28-213ENST00000530983 IFT22Q9H7X7 185 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 PISDQ9UG56 409 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 CABIN1Q9Y6J0 2220 aa17.06■□□□□ 0.32
VPS28-213ENST00000530983 SRFP11831 508 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 ZNF20P17024 532 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 BCKDHBP21953 392 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 MFAP5Q13361 173 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 THEM4Q5T1C6 240 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 OR5AS1Q8N127 324 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 OR4K15Q8NH41 348 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 CYYR1Q96J86 154 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 FAM117AQ9C073 453 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 ZNF576Q9H609 170 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 KLRF1Q9NZS2 232 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 MTCH2Q9Y6C9 303 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 F5H0A9 414 aaPredicted RBP17.05■□□□□ 0.32
VPS28-213ENST00000530983 OPN1LWP04000 364 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 PGA4P0DJD7 388 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 PGA3P0DJD8 388 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 SLC2A1P11166 492 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 CDAP32320 146 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 SMAD2Q15796 467 aaKnown RBP17.05■□□□□ 0.32
VPS28-213ENST00000530983 PLAC9Q5JTB6 97 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 RHBDD2Q6NTF9 364 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 GLIPR1L1Q6UWM5 242 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 KMT5CQ86Y97 462 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 SLC25A45Q8N413 288 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 INO80EQ8NBZ0 244 aaPredicted RBP17.05■□□□□ 0.32
VPS28-213ENST00000530983 POC1BQ8TC44 478 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 SEC61A2Q9H9S3 476 aa17.05■□□□□ 0.32
VPS28-213ENST00000530983 IGLV3-12A0A075B6K2 115 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 ZNF878C9JN71 531 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 H7C2Y5 167 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 CRHP06850 196 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 P2RY4P51582 365 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 MICBQ29980 383 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 PLPPR5Q32ZL2 321 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 BOLLQ8N9W6 283 aaKnown RBP17.04■□□□□ 0.32
VPS28-213ENST00000530983 NOXO1Q8NFA2 376 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 TMEM185AQ8NFB2 350 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 C12orf57Q99622 126 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 PCED1AQ9H1Q7 454 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 ZNF768Q9H5H4 540 aaKnown RBP17.04■□□□□ 0.32
VPS28-213ENST00000530983 ZNF319Q9P2F9 582 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 MRPS28Q9Y2Q9 187 aaKnown RBP17.04■□□□□ 0.32
VPS28-213ENST00000530983 TRBV11-1A0A0K0K1C0 115 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 SOCS1O15524 211 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 ZNF41P51814 821 aaPredicted RBP17.04■□□□□ 0.32
VPS28-213ENST00000530983 CLRN1P58418 232 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 HFEQ30201 348 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 UNQ6126/PRO20091Q6UXV3 157 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 ABHD12BQ7Z5M8 362 aaPredicted RBP17.04■□□□□ 0.32
VPS28-213ENST00000530983 UEVLDQ8IX04 471 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 OR8B12Q8NGG6 310 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 MRGPRX4Q96LA9 322 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 MOB1AQ9H8S9 216 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 PPP4R1LQ9P1A2 415 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 NDRG3Q9UGV2 375 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 ANAPC10Q9UM13 185 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 POLR1DQ9Y2S0 133 aa17.04■□□□□ 0.32
VPS28-213ENST00000530983 ATG12O94817 140 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 HEXBP07686 556 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 CHRM2P08172 466 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 GIMD1P0DJR0 217 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 ZNF17P17021 662 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 PSMB6P28072 239 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 SERPINF1P36955 418 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 OR3A4PP47883 348 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 SLC25A53Q5H9E4 307 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 TMEM88Q6PEY1 159 aa17.03■□□□□ 0.32
VPS28-213ENST00000530983 WDR74Q6RFH5 385 aaPredicted RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms