RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 PTGES2Q9H7Z7 377 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 VCX3AQ9NNX9 186 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 ACOT13Q9NPJ3 140 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 CMC2Q9NRP2 79 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 INIPQ9NRY2 104 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 CNOT2Q9NZN8 540 aaKnown RBP3.68□□□□□ -1.82
CD44-226ENST00000527889 ABI3Q9P2A4 366 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 NLKQ9UBE8 527 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 CLEC2DQ9UHP7 191 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 KLHL21Q9UJP4 597 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 ZNF229Q9UJW7 825 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 ZNF346Q9UL40 294 aaKnown RBP3.68□□□□□ -1.82
CD44-226ENST00000527889 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.68□□□□□ -1.82
CD44-226ENST00000527889 BAIAP2Q9UQB8 552 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 RPL36Q9Y3U8 105 aaKnown RBP3.68□□□□□ -1.82
CD44-226ENST00000527889 CSAG2Q9Y5P2 127 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 YLPM1P49750 1951 aaKnown RBP3.68□□□□□ -1.82
CD44-226ENST00000527889 FN1P02751 2386 aaKnown RBP3.68□□□□□ -1.82
CD44-226ENST00000527889 ARFGEF3Q5TH69 2177 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 A0A087WZY1 265 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 IGHV3-15A0A0B4J1V0 119 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 A0A0J9YW62 118 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 SMIM31A0A1B0GVY4 71 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 FAM230AA0A1W2PPH8 454 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 TUBAL3A6NHL2 446 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 FAM166BA8MTA8 275 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 ZNF99A8MXY4 864 aaPredicted RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 ZNF814B7Z6K7 855 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 MS4A18H0YCH9 400 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 PLPP3O14495 311 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 ARHGEF9O43307 516 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 ZNF208O43345 1280 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 AKR7A2O43488 359 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 TLX3O43711 291 aaPredicted RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 ZIC3O60481 467 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 RAMP1O60894 148 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 RPP14O95059 124 aaKnown RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 OR6A2O95222 327 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 RAB36O95755 333 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 TGM6O95932 706 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 SERPINA3P01011 423 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 IGF2P01344 180 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 TSPAN19P0C672 248 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 STAG3L2P0CL84 134 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 PIPP12273 146 aaPredicted RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 HLA-DOBP13765 273 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 M6PRP20645 277 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 EDN2P20800 178 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 CNR1P21554 472 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 PAICSP22234 425 aaKnown RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 GDF1P27539 372 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 CD40LGP29965 261 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 HTR1FP30939 366 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 SRD5A2P31213 254 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 ACVR1BP36896 505 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 NAA10P41227 235 aaPredicted RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 EIF1P41567 113 aaKnown RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 CDKN2AP42771 156 aaKnown RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 CEBPGP53567 150 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 HCCSP53701 268 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 MFAP4P55083 255 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 F2RL1P55085 397 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 P2RX3P56373 397 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 DSCR4P56555 118 aaPredicted RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 B3GALT5-AS1P59052 145 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 PRPS1P60891 318 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 CDC20Q12834 499 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 MYBPHQ13203 477 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 SELENBP1Q13228 472 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 SNTB2Q13425 540 aaKnown RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 KRR1Q13601 381 aaKnown RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 GPR176Q14439 515 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 RNPS1Q15287 305 aaKnown RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 SGCBQ16585 318 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 SGCAQ16586 387 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 CNPY1Q3B7I2 92 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 MS4A18Q3C1V0 323 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 ZNF829Q3KNS6 432 aaPredicted RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 MESTQ5EB52 335 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 SLC25A30Q5SVS4 291 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 OR2G6Q5TZ20 316 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 AGAP7PQ5VUJ5 663 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 UBE2UQ5VVX9 321 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 NXNL2Q5VZ03 156 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 CST9LP1Q5W188 147 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 OTPQ5XKR4 325 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 CARD17Q5XLA6 110 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 HIST2H2BCQ6DN03 193 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 C3orf33Q6P1S2 294 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 LEG1Q6P5S2 330 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 C5orf46Q6UWT4 87 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 GLDNQ6ZMI3 551 aaPredicted RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 UTS2BQ765I0 119 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 MEPCEQ7L2J0 689 aaKnown RBP3.67□□□□□ -1.82
CD44-226ENST00000527889 FAM122BQ7Z309 247 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 BIVMQ86UB2 503 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 GPAT4Q86UL3 456 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 LHFPL3Q86UP9 236 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 ZNF573Q86YE8 665 aa3.67□□□□□ -1.82
CD44-226ENST00000527889 GID4Q8IVV7 300 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms