RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 FBXO4Q9UKT5 387 aa11.86□□□□□ -0.51
TCOF1-213ENST00000514442 ASCC3Q8N3C0 2202 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 CEP290O15078 2479 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 PMP2P02689 132 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 APOBEC1P41238 236 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 RPL18Q07020 188 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 IAH1Q2TAA2 248 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 SLC36A2Q495M3 483 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 COMMD1Q8N668 190 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 TMEM229BQ8NBD8 167 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 MORN4Q8NDC4 146 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 ORAI1Q96D31 301 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 MTFP1Q9UDX5 166 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 SCAF4O95104 1147 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 HBE1P02100 147 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 CD37P11049 281 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 NFYBP25208 207 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 SRSF5Q13243 272 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 INPP5JQ15735 1006 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 RPUSD3Q6P087 351 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 KIRREL2Q6UWL6 708 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 MKXQ8IYA7 352 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 FBXO17Q96EF6 278 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 OR52A1Q9UKL2 312 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 SHISA7A6NL88 538 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 ST8SIA5O15466 376 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 LRP3O75074 770 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 BPNT1O95861 308 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 CD81P60033 236 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 HSF1Q00613 529 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 MRM1Q6IN84 353 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 PIGTQ969N2 578 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 MVB12AQ96EY5 273 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 LAT2Q9GZY6 243 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 MRPS18AQ9NVS2 196 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 KLRC4-KLRK1H3BQV0 150 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 OR7C1O76099 320 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 C21orf58P58505 322 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 H3F3AP84243 136 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 GUCA2AQ02747 115 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 OR2A2Q6IF42 318 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 DND1Q8IYX4 353 aaKnown RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 OR5L1Q8NGL2 311 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 AP1S3Q96PC3 154 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 SMOC1Q9H4F8 434 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 MED29Q9NX70 200 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 TMEM184BQ9Y519 407 aaPredicted RBP11.85□□□□□ -0.51
TCOF1-213ENST00000514442 POMT1Q9Y6A1 747 aa11.85□□□□□ -0.51
TCOF1-213ENST00000514442 SIPA1L1O43166 1804 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 TRAPPC2LH3BP13 241 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 F12P00748 615 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 FAM199XQ6PEV8 388 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 NPSR1Q6W5P4 371 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 MAMSTRQ6ZN01 415 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 FAM185AQ8N0U4 392 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 OR5T1Q8NG75 326 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 SELENOIQ9C0D9 397 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 SLC25A31Q9H0C2 315 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 MRPS28Q9Y2Q9 187 aaKnown RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ELOA3CA0A087WX78 387 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 FFAR1O14842 300 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ABHD16AO95870 558 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ANKRD34CP0C6C1 535 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 RNF151Q2KHN1 245 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 LIPNQ5VXI9 398 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ATRAIDQ6UW56 229 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 TMEM178AQ8NBL3 297 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 HSD17B11Q8NBQ5 300 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 NUDT9Q9BW91 350 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 DEFB127Q9H1M4 99 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 CHST11Q9NPF2 352 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 EHFQ9NZC4 300 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 CGGBP1Q9UFW8 167 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 IGHV3-15A0A0B4J1V0 119 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 OR6C76A6NM76 312 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 IGHA1P01876 353 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 GSK3AP49840 483 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 TAS2R46P59540 309 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 EIF4EBP2Q13542 120 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 AWAT1Q58HT5 328 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ARSJQ5FYB0 599 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 LANCL3Q6ZV70 420 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 BATF2Q8N1L9 274 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 WNT16Q9UBV4 365 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 GAB2Q9UQC2 676 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 GPR55Q9Y2T6 319 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 A0A1B0GV90 55 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 FOLR1P15328 257 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 TLE4Q04727 773 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ZNF345Q14585 488 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 TOMM34Q15785 309 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 GLYATL3Q5SZD4 288 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 FCRL6Q6DN72 434 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 DHRS7BQ6IAN0 325 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 KCNIP4Q6PIL6 250 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ZNF695Q8IW36 515 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 GPR119Q8TDV5 335 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 SAT2Q96F10 170 aaPredicted RBP11.84□□□□□ -0.51
TCOF1-213ENST00000514442 ZNF426Q9BUY5 554 aa11.84□□□□□ -0.51
TCOF1-213ENST00000514442 TMEM59Q9BXS4 323 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms