RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PHLDA2Q53GA4 152 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 AWAT1Q58HT5 328 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 GLYATL3Q5SZD4 288 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 NXNL2Q5VZ03 156 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 FAM109BQ6ICB4 259 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 C11orf87Q6NUJ2 197 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF765Q7L2R6 523 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF511Q8NB15 262 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 OR51A2Q8NGJ7 313 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 OR5M9Q8NGP3 310 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 KCNJ15Q99712 375 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 ATP5SQ99766 215 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 LRFN3Q9BTN0 628 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 PLEKHF2Q9H8W4 249 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 HES4Q9HCC6 221 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 GPR55Q9Y2T6 319 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 EMC9Q9Y3B6 208 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 BTAF1O14981 1849 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 MBTPS2O43462 519 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 GPX5O75715 221 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 GLCEO94923 617 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 CALCBP10092 127 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SPNP16150 400 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SIGLEC14Q08ET2 396 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SAMD13Q5VXD3 122 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 ASTLQ6HA08 431 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SCGB1D4Q6XE38 83 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SHISA6Q6ZSJ9 500 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 MFSD4AQ8N468 514 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF740Q8NDX6 193 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 OR10A7Q8NGE5 316 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 ZCCHC14Q8WYQ9 949 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 PDLIM5Q96HC4 596 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 IL19Q9UHD0 177 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SPAG17Q6Q759 2223 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SBF2Q86WG5 1849 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 TRBV23-1A0A0A0MS06 115 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 MCRIP1C9JLW8 97 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 G3V3Y1 287 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF593O00488 134 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 CST4P01036 141 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SLC6A8P48029 635 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 CSNK1A1P48729 337 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 PPP2CBP62714 309 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 HLA-DRB3P79483 266 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 DEFB133Q30KQ1 61 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 NSUN5P2Q63ZY6 315 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 SLC22A24Q8N4F4 322 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 OR52L2PQ8NGH6 319 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 OR2T10Q8NGZ9 312 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 PRSS3P2Q8NHM4 247 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 LMF2Q9BU23 707 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 ARRDC1-AS1Q9H2J1 176 aa7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 MRPS28Q9Y2Q9 187 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-218ENST00000513024 THSD7AQ9UPZ6 1657 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 A0A1W2PPE2 198 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PLSCR5A0PG75 271 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 BLACEA4D250 179 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TMEM210A6NLX4 147 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 GFRA3O60609 400 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 ADRA1AP35348 466 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 CSN1S1P47710 185 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TAZQ16635 292 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 COX19Q49B96 90 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PAQR6Q6TCH4 344 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 VN1R17PQ8TDU5 208 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TIMD4Q96H15 378 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 NMES1Q9C002 83 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 CXorf36Q9H7Y0 433 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 NECAP2Q9NVZ3 263 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 FITM1A5D6W6 292 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 MAP1LC3B2A6NCE7 125 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 SULT2B1O00204 365 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 FOXE1O00358 373 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 C1orf105O95561 183 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 IL5P05113 134 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 CD79AP11912 226 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 CD200P41217 278 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PLPP7Q8NBV4 271 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 OR10P1Q8NGE3 313 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 STACQ99469 402 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 COL25A1Q9BXS0 654 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 MAP1LC3BQ9GZQ8 125 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 C7orf77A4D0Y5 90 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 IFITM10A6NMD0 228 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TRAPPC2LH3BP13 241 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TMEM189-UBE2V1I3L0A0 370 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PDE6DO43924 150 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 CTSLP07711 333 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PVRP15151 417 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 HIST1H1CP16403 213 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 EPHA2P29317 976 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 HTR1FP30939 366 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 HINT1P49773 126 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 SULT1A1P50225 295 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 FOXK2Q01167 660 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PAX5Q02548 391 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 IKZF1Q13422 519 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF273Q14593 569 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 UBE2V2Q15819 145 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms