RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SCAMP4Q969E2 229 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 ADAD1Q96M93 576 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 NMNAT3Q96T66 252 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 PRSS16Q9NQE7 514 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 B3GAT1Q9P2W7 334 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 IER3IP1Q9Y5U9 82 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 GREB1Q4ZG55 1949 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 DCDC2BA2VCK2 349 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 RBFOX3A6NFN3 312 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF860A6NHJ4 632 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 SMPD2O60906 423 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 PMPCAQ10713 525 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 HIKESHIQ53FT3 197 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 ZNF417Q8TAU3 575 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 NUDT11Q96G61 164 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 IGSF21Q96ID5 467 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 CGGBP1Q9UFW8 167 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 RNF150Q9ULK6 438 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 PAM16Q9Y3D7 125 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 A0A087WWC5 75 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 TMPRSS11DO60235 418 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 OR2J2O76002 312 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 WDR25Q64LD2 544 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 CLEC18BQ6UXF7 455 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 ZDHHC22Q8N966 263 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 FAM174AQ8TBP5 190 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 ANKRD9Q96BM1 317 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 OR7D2Q96RA2 312 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 PRSS27Q9BQR3 290 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 GSX1Q9H4S2 264 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 ADAP2Q9NPF8 381 aa10.78□□□□□ -0.68
LIMCH1-213ENST00000511496 A0A1W2PS29 197 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 ARL5CA6NH57 179 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 KLF3P57682 345 aaPredicted RBP10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 TDRG1Q3Y452 100 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 GXYLT1Q4G148 440 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 FAHD2BQ6P2I3 314 aaPredicted RBP10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 OPN5Q6U736 354 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 Q6ZVU0 165 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 GRASPQ7Z6J2 395 aaPredicted RBP10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 NECAP1Q8NC96 275 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 STT3BQ8TCJ2 826 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 METTL21AQ8WXB1 218 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 FAHD2AQ96GK7 314 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 C2orf50Q96LR7 162 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 MRPS2Q9Y399 296 aaKnown RBP10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 RFNGQ9Y644 331 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 PATJQ8NI35 1801 aa10.77□□□□□ -0.68
LIMCH1-213ENST00000511496 H3BNC9 293 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 TSPAN6O43657 245 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 LMO1P25800 156 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 RND3P61587 244 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 SELENOTP62341 195 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 GLYATL3Q5SZD4 288 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 CST9Q5W186 159 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 ADIPOR2Q86V24 386 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 GBGT1Q8N5D6 347 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 CSNK1A1LQ8N752 337 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 COX18Q8N8Q8 333 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC41A2Q96JW4 573 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 CLUHP3Q96NS8 147 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 ZNF2Q9BSG1 426 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 TRIM2Q9C040 744 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 CUTCQ9NTM9 273 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 NAGKQ9UJ70 344 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 MED31Q9Y3C7 131 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 METTL12A8MUP2 240 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 ZNF264O43296 627 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 SLCO2B1O94956 709 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 APODP05090 189 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 HOXC12P31275 282 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 ASCL1P50553 236 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 CEBPEQ15744 281 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 ANKRD55Q3KP44 614 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 OR2AP1Q8NGE2 309 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 GPR119Q8TDV5 335 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 HAS2Q92819 552 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 IL17FQ96PD4 163 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 SLC26A1Q9H2B4 701 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 ARV1Q9H2C2 271 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 ELP3Q9H9T3 547 aa10.77□□□□□ -0.69
LIMCH1-213ENST00000511496 HEATR5BQ9P2D3 2071 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 CENPVL1A0A0U1RR11 272 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 CSRP1P21291 193 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 CLDN6P56747 220 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 SPEM2Q0P670 501 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 OTPQ5XKR4 325 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 DCXRQ7Z4W1 244 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 TSSK2Q96PF2 358 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 ZDHHC6Q9H6R6 413 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 VAX2Q9UIW0 290 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 KIR2DL5BA0A0G2JN68 375 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 KIR2DL5BA0A0G2JPC4 375 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 FEZF1A0PJY2 475 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 CLDN34H7C241 214 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 HCRTR2O43614 444 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 TMEM127O75204 238 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 VASPP50552 380 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 MMDQ15546 238 aa10.76□□□□□ -0.69
LIMCH1-213ENST00000511496 IAH1Q2TAA2 248 aaPredicted RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms