RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 IL2RAP01589 272 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 GIMD1P0DJR0 217 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SLC25A4P12235 298 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HLA-GP17693 338 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 AGTR1P30556 359 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 EIF1AXP47813 144 aaKnown RBP14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CAPZA1P52907 286 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SUMO3P55854 103 aaPredicted RBP14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 LPCAT3Q6P1A2 487 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF529Q6P280 563 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ANKRD37Q7Z713 158 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SLC25A45Q8N413 288 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CLRN3Q8NCR9 226 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RNF138Q8WVD3 245 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NUDCD2Q8WVJ2 157 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FAM46BQ96A09 425 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PRRT1Q99946 306 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 COA4Q9NYJ1 87 aa14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NOP16Q9Y3C1 178 aaKnown RBP14.27□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ETV2O00321 342 aaPredicted RBP14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 UBBP0CG47 229 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 CD96P40200 585 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 CLDN6P56747 220 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RPS27AP62979 156 aaKnown RBP14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 UBA52P62987 128 aaKnown RBP14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 FGL1Q08830 312 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PPP1R1AQ13522 171 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RNASE10Q5GAN6 216 aaKnown RBP14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 C11orf87Q6NUJ2 197 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LYG2Q86SG7 212 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 DDIT4LQ96D03 193 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SEC22AQ96IW7 307 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 C5orf34Q96MH7 638 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 NUDT22Q9BRQ3 303 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 MRPL13Q9BYD1 178 aaKnown RBP14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SLC25A32Q9H2D1 315 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SERINC1Q9NRX5 453 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SLC5A6Q9Y289 635 aa14.27□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PQLC2LA1A4F0 135 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 H3BML4 177 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SYT7O43581 403 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 GATCO43716 136 aaKnown RBP14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 GDF9O60383 454 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 BPNT1O95861 308 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 GLB1P16278 677 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 GNALP38405 381 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SLC22A24Q8N4F4 322 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SLC38A9Q8NBW4 561 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 CHST4Q8NCG5 386 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 MRPS24Q96EL2 167 aaKnown RBP14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PCED1AQ9H1Q7 454 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ALKBH4Q9NXW9 302 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RASL12Q9NYN1 266 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 GPN3Q9UHW5 284 aaPredicted RBP14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 CFAP47Q6ZTR5 3102 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 IGLV3-12A0A075B6K2 115 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LOC100509620A0A075B734 347 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 A0A1W2PNV4 684 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LNP1A1A4G5 178 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 C9orf170A2RU37 121 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RNF222A6NCQ9 220 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ZNF345Q14585 488 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LIN54Q6MZP7 749 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 KMT5CQ86Y97 462 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ZDHHC22Q8N966 263 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR10H5Q8NGA6 315 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 POC1BQ8TC44 478 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ZNF768Q9H5H4 540 aaKnown RBP14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 BARX1Q9HBU1 254 aaPredicted RBP14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TINAGQ9UJW2 476 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 B3GALT5Q9Y2C3 310 aa14.26□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR2AT4A6NND4 320 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TMEM14DPA8MWL7 114 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 GNB3P16520 340 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ATP1B3P54709 279 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 TAF13Q15543 124 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 Q3ZCU0 254 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 FAM74A1Q5RGS3 127 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 RHBDD2Q6NTF9 364 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 KLHL24Q6TFL4 600 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 SUMF1Q8NBK3 374 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PXT1Q8NFP0 134 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR13C9Q8NGT0 318 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 NUBPLQ8TB37 319 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 MITD1Q8WV92 249 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 FN3KRPQ9HA64 309 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 FBLN5Q9UBX5 448 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ATXN7L1Q9ULK2 861 aaPredicted RBP14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 KCNK7Q9Y2U2 307 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 VSTM2BA6NLU5 285 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 STK17BO94768 372 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR2F2O95006 317 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ANOS1P23352 680 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 LAP3P28838 519 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 HRH1P35367 487 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 PTGDSP41222 190 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 MEOX2P50222 304 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 ARHGDIBP52566 201 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 OR2F1Q13607 317 aa14.25□□□□□ -0.13
MSH5-SAPCD1-208ENST00000498473 WDR74Q6RFH5 385 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms