RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 EMCNQ9ULC0 261 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 NOP16Q9Y3C1 178 aaKnown RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 SOX21Q9Y651 276 aaPredicted RBP3.24□□□□□ -1.89
USP54-217ENST00000498213 POMT1Q9Y6A1 747 aa3.24□□□□□ -1.89
USP54-217ENST00000498213 HEATR1Q9H583 2144 aaKnown RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 WNK2Q9Y3S1 2297 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 A0A087WUJ7 227 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 IGHV1-69-2A0A0G2JMI3 117 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 IQCMA0A1B0GVH7 501 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 A0A1W2PPW3 197 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 TMEM72A0PK05 275 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ZNF726A6NNF4 738 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 GMFGO60234 142 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 PEX11AO75192 247 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 MPZL1O95297 269 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 NGFP01138 241 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 IGHV3-9P01782 118 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 IGHV2-5P01817 119 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 IGHMP01871 453 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 OPN1LWP04000 364 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 SERPINE1P05121 402 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 CRYBA1P05813 215 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ADRA2AP08913 450 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 OR12D1P0DN82 309 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 NR2F1P10589 423 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 COX5BP10606 129 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 G6PDP11413 515 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 LBPP18428 481 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 CALCRP30988 508 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 SOAT1P35610 550 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ACAA2P42765 397 aaKnown RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 NPY4RP50391 375 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 RPL14P50914 215 aaKnown RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 DAP3P51398 398 aaKnown RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 ZNF133P52736 654 aaPredicted RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 PCBD1P61457 104 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 GABPB1Q06547 395 aaPredicted RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 PUDPQ08623 228 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 PMS2P3Q13401 168 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 PCLAFQ15004 111 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 OR7A5Q15622 319 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 KCNJ8Q15842 424 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 TBC1D28Q2M2D7 210 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ZNF181Q2M3W8 571 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 GPAT3Q53EU6 434 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 HIKESHIQ53FT3 197 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 PAPPA-AS1Q5QFB9 102 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 MRPL2Q5T653 305 aaKnown RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 FAM219BQ5XKK7 198 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 CLEC6AQ6EIG7 209 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 CGB2Q6NT52 195 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 TMEM53Q6P2H8 277 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 NIPAL3Q6P499 406 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ZNF613Q6PF04 617 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 DHRS4L2Q6PKH6 230 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 BTNL3Q6UXE8 466 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 CARM1Q86X55 608 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 RNF130Q86XS8 419 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 C10orf107Q8IVU9 208 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 TMEM123Q8N131 208 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 TMEM99Q8N816 258 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ATP6V1C2Q8NEY4 427 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 OR5D16Q8NGK9 328 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 OR52P1PQ8NH57 321 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 SYNPRQ8TBG9 265 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 PNPT1Q8TCS8 783 aaKnown RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 TCP10LQ8TDR4 215 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ST7LQ8TDW4 575 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 NPRL2Q8WTW4 380 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 LIPHQ8WWY8 451 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 SNAPC3Q92966 411 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 SLC25A44Q96H78 314 aaPredicted RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 PLEKHA8Q96JA3 519 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ZNF75AQ96N20 296 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ALKBH3Q96Q83 286 aaPredicted RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 OR2M2Q96R28 347 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ZNF607Q96SK3 696 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 SLC30A2Q9BRI3 323 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 KCNN2Q9H2S1 579 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ZNF665Q9H7R5 613 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ELOVL3Q9HB03 270 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 SLCO1B3Q9NPD5 702 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 MAN2C1Q9NTJ4 1040 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 C1RLQ9NZP8 487 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 B3GAT1Q9P2W7 334 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 EIF3KQ9UBQ5 218 aaKnown RBP3.23□□□□□ -1.89
USP54-217ENST00000498213 RPS6KB2Q9UBS0 482 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 ZNF69Q9UC07 566 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 BAIAP2L1Q9UHR4 511 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 POFUT2Q9Y2G5 429 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 DNAH7Q8WXX0 4024 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 HECTD4Q9Y4D8 3996 aa3.23□□□□□ -1.89
USP54-217ENST00000498213 TEX13CA0A0J9YWL9 993 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 P2RY10O00398 339 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 RFXANKO14593 260 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 PPIHO43447 177 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 NDUFA2O43678 99 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 PLPP2O43688 288 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 NME6O75414 186 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 UPK3AO75631 287 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms