RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	MYEF2	Q9P2K5	600 aa	Known RBP	12.48	□□□□□ -0.41
BRCA1-223	ENST00000494123	PURG	Q9UJV8	347 aa	Known RBP	12.48	□□□□□ -0.41
BRCA1-223	ENST00000494123	FBXO9	Q9UK97	447 aa	Predicted RBP	12.48	□□□□□ -0.41
BRCA1-223	ENST00000494123	SLC22A13	Q9Y226	551 aa		12.48	□□□□□ -0.41
BRCA1-223	ENST00000494123	PMF1-BGLAP	U3KQ54	211 aa		12.48	□□□□□ -0.41
BRCA1-223	ENST00000494123		M0R233	179 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	TTR	P02766	147 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	KITLG	P21583	273 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	ALDH3B1	P43353	468 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	SWI5	Q1ZZU3	235 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	MST1L	Q2TV78	715 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	WDR38	Q5JTN6	314 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	FDX2	Q6P4F2	183 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	OR5AS1	Q8N127	324 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	PRSS35	Q8N3Z0	413 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	NANOGP1	Q8N7R0	232 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	BHLHE23	Q8NDY6	225 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	OR51E1	Q8TCB6	317 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	PIGT	Q969N2	578 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	SPSB4	Q96A44	273 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	REPIN1	Q9BWE0	567 aa	Known RBP	12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	CXorf56	Q9H5V9	222 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	GPR84	Q9NQS5	396 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	PLEKHA6	Q9Y2H5	1048 aa		12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	FLNB	O75369	2602 aa	Known RBP	12.47	□□□□□ -0.41
BRCA1-223	ENST00000494123	AKAP6	Q13023	2319 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	CACNA1D	Q01668	2161 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123		E9PI62	339 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	P2RY10	O00398	339 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	CD8A	P01732	235 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	UBC	P0CG48	685 aa	Known RBP	12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	DNASE1	P24855	282 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	TGM4	P49221	684 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	GTF2A1	P52655	376 aa	Predicted RBP	12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	CHN2	P52757	468 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	ALKBH1	Q13686	389 aa	Known RBP	12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	MED22	Q15528	200 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	CCDC58	Q4VC31	144 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	ZMAT1	Q5H9K5	638 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	C11orf71	Q6IPW1	123 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	RPL22L1	Q6P5R6	122 aa	Known RBP	12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	FAM71F1	Q96KD3	344 aa	Predicted RBP	12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	CACNG6	Q9BXT2	260 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	CYSLTR2	Q9NS75	346 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	FRRS1L	Q9P0K9	344 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	CGGBP1	Q9UFW8	167 aa	Predicted RBP	12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	ST6GALNAC2	Q9UJ37	374 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	FBN2	P35556	2912 aa		12.46	□□□□□ -0.41
BRCA1-223	ENST00000494123	TRBV2	A0A0J9YWF9	115 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	hCG_38984	A0A1B0GV85	526 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123		A0A1B0GVI7	797 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	CD300LB	A8K4G0	201 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	MRPS14	O60783	128 aa	Known RBP	12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	MTRF1	O75570	445 aa	Known RBP	12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	TNFAIP8	O95379	198 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	LIPA	P38571	399 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	KIR3DL2	P43630	455 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	GSK3A	P49840	483 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	CCR9	P51686	369 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	TAS2R43	P59537	309 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	NANOS3	P60323	173 aa	Known RBP	12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	FAM3A	P98173	230 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	IRF3	Q14653	427 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	KCTD21	Q4G0X4	260 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	ZNF676	Q8N7Q3	588 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	RNF166	Q96A37	237 aa	Predicted RBP	12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	LYZL4	Q96KX0	146 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	VRK1	Q99986	396 aa	Predicted RBP	12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	COMMD4	Q9H0A8	199 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	MS4A5	Q9H3V2	200 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	NBPF19	A0A087WUL8	3843 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	TACC2	O95359	2948 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	APC	P25054	2843 aa		12.45	□□□□□ -0.42
BRCA1-223	ENST00000494123	IQCF6	A8MYZ5	107 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	SYT7	O43581	403 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	ERCC1	P07992	297 aa	Predicted RBP	12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	NAT2	P11245	290 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	CD53	P19397	219 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	CDKN1A	P38936	164 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	DDOST	P39656	456 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	PPOX	P50336	477 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	ZNF81	P51508	661 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	SPHAR	Q15513	63 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	TMEM255A	Q5JRV8	349 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	TMEM244	Q5VVB8	128 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	FTMT	Q8N4E7	242 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	SVOP	Q8N4V2	548 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	ZNF485	Q8NCK3	441 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	OR8G5	Q8NG78	346 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	OR56B2P	Q8NGI1	322 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	OR5AK2	Q8NH90	309 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	LOC107986453	A0A1B0GWG9	222 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	TMEM212	A6NML5	194 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	ANKRD30BL	A7E2S9	258 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123		H3BSH0	61 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	DHRS3	O75911	302 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	MAP2K4	P45985	399 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	MAP2K3	P46734	347 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	MMP15	P51511	669 aa		12.44	□□□□□ -0.42
BRCA1-223	ENST00000494123	CDH15	P55291	814 aa		12.44	□□□□□ -0.42

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