RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZNF829Q3KNS6 432 aaPredicted RBP13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SPRNQ5BIV9 151 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR10H4Q8NGA5 316 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR8B12Q8NGG6 310 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR56B2PQ8NGI1 322 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 RHOXF1Q8NHV9 184 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ITLN1Q8WWA0 313 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SGK3Q96BR1 496 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR2V2Q96R30 315 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 APOL4Q9BPW4 351 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SLC22A4Q9H015 551 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 RGCCQ9H4X1 137 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 FAM206AQ9NX38 181 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 AASSQ9UDR5 926 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 NOP16Q9Y3C1 178 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CACNG2Q9Y698 323 aa13.8□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 hCG_38984A0A1B0GV85 526 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TMEM269A0A1B0GVZ9 245 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQL4 384 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ACOD1A6NK06 481 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CLDN25C9JDP6 229 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TACSTD2P09758 323 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 DDOSTP39656 456 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SRP9P49458 86 aaKnown RBP13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CHN2P52757 468 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 FAM3AP98173 230 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TMEM249Q2WGJ8 235 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SSX6Q7RTT6 188 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CCL17Q92583 94 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 RNFT2Q96EX2 444 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MEGF10Q96KG7 1140 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 Q96MT0 163 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TREM2Q9NZC2 230 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MRPL15Q9P015 296 aaKnown RBP13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 NKX1-2Q9UD57 310 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ZNF391Q9UJN7 358 aa13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MAP1AP78559 2803 aaPredicted RBP13.79□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 F5H5P2 479 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MAGEB4O15481 346 aaPredicted RBP13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 HLA-DPB1P04440 258 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 KRT8P05787 483 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CA6P23280 308 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MMP16P51512 607 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ZNF91Q05481 1191 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SLC34A1Q06495 639 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 KRTAP1-1Q07627 177 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 SLC3A1Q07837 685 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MFGE8Q08431 387 aaPredicted RBP13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 OR8G1Q15617 311 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TTC23Q5W5X9 447 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 CYGBQ8WWM9 190 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 ADAT1Q9BUB4 502 aaKnown RBP13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 VCXQ9H320 206 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MOB1AQ9H8S9 216 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 MRM2Q9UI43 246 aaKnown RBP13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 TANC2Q9HCD6 1990 aa13.78□□□□□ -0.2
MSH5-SAPCD1-206ENST00000491552 LRP5LA4QPB2 252 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ANKRD30BLA7E2S9 258 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SRSF10O75494 262 aaKnown RBP13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CD200P41217 278 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GSK3AP49840 483 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ACTC1P68032 377 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ACTA1P68133 377 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IL5RAQ01344 420 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 OR8B8Q15620 311 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ZNF691Q5VV52 312 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PLEKHG7Q6ZR37 379 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 Q71RC1 249 aaPredicted RBP13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 DHRSXQ8N5I4 330 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 YIPF7Q8N8F6 280 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 TIMD4Q96H15 378 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 LYZL4Q96KX0 146 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PBOV1Q9GZY1 135 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 RNPEPL1Q9HAU8 725 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 NUFIP1Q9UHK0 495 aaKnown RBP13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GTF2A1LQ9UNN4 478 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PPP1R3CQ9UQK1 317 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 R4GMQ9 66 aa13.77□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 A0A0U1RQV5 110 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 METTL15A6NJ78 407 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 LOC110117498-PIK3R3F6TDL0 507 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 H0YHG0 523 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CD5LO43866 347 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GMDSO60547 372 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CLIC3O95833 236 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 PNPP00491 289 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 IGHV4-31P0DP07 118 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 DBTP11182 482 aaKnown RBP13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 GZMKP49863 264 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ADARB1P78563 741 aaKnown RBP13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ZNF85Q03923 595 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 SNCBQ16143 134 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 ZNF684Q5T5D7 378 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 AVPI1Q5T686 147 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 KLBQ86Z14 1044 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CELF2-AS1Q8N7Q2 184 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 CSNK2A3Q8NEV1 391 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 APH1BQ8WW43 257 aa13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 DVL3Q92997 716 aaPredicted RBP13.76□□□□□ -0.21
MSH5-SAPCD1-206ENST00000491552 LGALS12Q96DT0 336 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms