RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 COL6A5A8TX70 2615 aa1.69□□□□□ -2.14
HMGB1-208ENST00000490788 TP53BP1Q12888 1972 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF532Q9HCE3 1301 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ATG2BQ96BY7 2078 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 MYH7BA7E2Y1 1941 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CSMD2Q7Z408 3487 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 A0A075B6Q4 140 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 A0A0A6YYH2 397 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 A0A0U1RQS6 177 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 A0A1B0GW15 77 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF840PA6NDX5 716 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 C5orf52A6NGY3 159 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 A6NJ64 397 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 RPL37AP8A6NKH3 93 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 GABRR3A8MPY1 467 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SERPINE3A8MV23 424 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 C1orf196B1AJZ1 125 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SRRM5B3KS81 715 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 KPNA3O00505 521 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF263O14978 683 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CTDSPLO15194 276 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 STX7O15400 261 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CFLARO15519 480 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 MLNRO43193 412 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TGOLN2O43493 480 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CHST10O43529 356 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SELENOFO60613 162 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TSPAN2O60636 221 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ICOSLGO75144 302 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ECI2O75521 394 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SUPT7LO94864 414 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 BRI3O95415 125 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 FGF19O95750 216 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TSPAN12O95859 305 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 C6orf47O95873 294 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 AK1P00568 194 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 F10P00742 488 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TGFAP01135 160 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CALCAP01258 141 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 APOC3P02656 99 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SERPINA5P05154 406 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ALPPP05187 535 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CRYBA1P05813 215 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 C2P06681 752 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 APRTP07741 180 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SLC35G4P0C7Q5 338 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF286BP0CG31 522 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 STAG3L2P0CL84 134 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 DNAH10OSP0CZ25 163 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ALPPL2P10696 532 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 COX6B1P14854 86 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SRMP19623 302 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 GZMHP20718 246 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 HNRNPA2B1P22626 353 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 UQCRC2P22695 453 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 GLRA1P23415 457 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PSMA5P28066 241 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PSMB6P28072 239 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CD1BP29016 333 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 S100A11P31949 105 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CEACAM3P40198 252 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ELK3P41970 407 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ALDH3B1P43353 468 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 IER3P46695 156 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 RPS5P46782 204 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PSMD8P48556 350 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 FHITP49789 147 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CCR8P51685 355 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PRKXP51817 358 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CEBPGP53567 150 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PLA2G16P53816 162 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM33P57088 247 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 MLF1P58340 268 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PTENP60484 403 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PRPS1P60891 318 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 RAB5BP61020 215 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 LSM3P62310 102 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 LSM6P62312 80 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 RPS6P62753 249 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 VLDLRP98155 873 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 BDH1Q02338 343 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CAV1Q03135 178 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 C2orf80Q0P641 193 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 FABP9Q0Z7S8 132 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NPRL3Q12980 569 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 GPR50Q13585 617 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 EXOSC2Q13868 293 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 PTK6Q13882 451 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 DGCR6Q14129 220 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 CRMP1Q14194 572 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 HEPACAMQ14CZ8 416 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SURF2Q15527 256 aaPredicted RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ACKR1Q16570 336 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 MEP1BQ16820 701 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 TATDN3Q17R31 274 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 NDUFAF6Q330K2 333 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 SCGB2B2Q4G0G5 96 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 RNASE10Q5GAN6 216 aaKnown RBP1.68□□□□□ -2.14
HMGB1-208ENST00000490788 COQ5Q5HYK3 327 aa1.68□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF506Q5JVG8 444 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms