RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 CARD18P57730 90 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF121P58317 390 aaPredicted RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 LCN2P80188 198 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 SLC39A6Q13433 755 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 SMUG1Q53HV7 270 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 TPTE2P1Q5T6R2 138 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 SAXO2Q658L1 398 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 BHLHA15Q7RTS1 189 aaPredicted RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 MRPL21Q7Z2W9 205 aaKnown RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 NEGR1Q7Z3B1 354 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 MRPL55Q7Z7F7 128 aaKnown RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 LINC00523Q86TU6 105 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 CALHM1Q8IU99 346 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 CDKL3Q8IVW4 592 aaPredicted RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 COX18Q8N8Q8 333 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 OR11H7Q8NGC8 314 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 OR4K5Q8NGD3 323 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 OR10W1Q8NGF6 305 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 OR52K1Q8NGK4 314 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF461Q8TAF7 563 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 BAALCQ8WXS3 180 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 RGP1Q92546 391 aaPredicted RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 NAT6Q93015 286 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 DCPSQ96C86 337 aaKnown RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 FLYWCH2Q96CP2 140 aaKnown RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 RBMXL1Q96E39 390 aaKnown RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 NRBF2Q96F24 287 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF488Q96MN9 340 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 OPALINQ96PE5 141 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 SAMD10Q9BYL1 202 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 IQCGQ9H095 443 aaKnown RBP1.28□□□□□ -2.2
CPSF3-205ENST00000489629 OR52D1Q9H346 318 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 RGCCQ9H4X1 137 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 EDA2RQ9HAV5 297 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 SLC17A7Q9P2U7 560 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF229Q9UJW7 825 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 KPTNQ9Y664 436 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 SYNRGQ9UMZ2 1314 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 NEURL4Q96JN8 1562 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 KIAA1671Q9BY89 1806 aa1.28□□□□□ -2.2
CPSF3-205ENST00000489629 SIGLEC1Q9BZZ2 1709 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 FHOD3Q2V2M9 1422 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 TNIKQ9UKE5 1360 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 ADGRA3Q8IWK6 1321 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 IGHV3OR16-9A0A0B4J2B5 98 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 A0A1W2PPV4 95 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 TMEM120BA0PK00 339 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 TSPAN11A1L157 253 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 SLC22A20A6NK97 555 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 C17orf51A8MQB3 221 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 PDZK1P1A8MUH7 402 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 H0YJW9 148 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 RPL36A-HNRNPH2H7BZ11 118 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 ZNF701M0R085 212 aaPredicted RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 KDELR3O43731 214 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 GMDSO60547 372 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 SLC19A2O60779 497 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 REM1O75628 298 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CCNKO75909 580 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 SEMA3DO95025 777 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 MPZL1O95297 269 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 OTCP00480 354 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 HPRT1P00492 218 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CSTAP01040 98 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CATP04040 527 aaKnown RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 TACSTD2P09758 323 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 OR8U9P0C7N5 309 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 C1GALT1C1LP0DN25 315 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CD37P11049 281 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 IL32P24001 234 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 NPY1RP25929 384 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CD34P28906 385 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CD70P32970 193 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 OPRK1P41145 380 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 TNFSF9P41273 254 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 RBM34P42696 430 aaKnown RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 UBE2E1P51965 193 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CDKN2DP55273 166 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 GFERP55789 205 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 RPS23P62266 143 aaKnown RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 ZNF33AQ06730 810 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 IFT88Q13099 833 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 DNAJC3Q13217 504 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 DGCR6Q14129 220 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 NCF4Q15080 339 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 RBMY1FQ15415 496 aaKnown RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 SNRNP35Q16560 246 aaKnown RBP1.27□□□□□ -2.21
CPSF3-205ENST00000489629 BEX5Q5H9J7 111 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 TCEAL5Q5H9L2 206 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 H3F3CQ6NXT2 135 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 ZNF880Q6PDB4 577 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 SHISA6Q6ZSJ9 500 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 SLC16A13Q7RTY0 426 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 HORMAD1Q86X24 394 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 NKAIN4Q8IVV8 208 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 FAM71AQ8IYT1 594 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 PDCL2Q8N4E4 241 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 KIF2BQ8N4N8 673 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 CBR4Q8N4T8 237 aa1.27□□□□□ -2.21
CPSF3-205ENST00000489629 LINC00304Q8N9R0 145 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms