RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MITD1Q8WV92 249 aa15.89■□□□□ 0.13
VIM-206ENST00000487938 DNASE2BQ8WZ79 361 aa15.89■□□□□ 0.13
VIM-206ENST00000487938 MRPS24Q96EL2 167 aaKnown RBP15.89■□□□□ 0.13
VIM-206ENST00000487938 TMEM41AQ96HV5 264 aa15.89■□□□□ 0.13
VIM-206ENST00000487938 LPAR5Q9H1C0 372 aa15.89■□□□□ 0.13
VIM-206ENST00000487938 SLC25A32Q9H2D1 315 aa15.89■□□□□ 0.13
VIM-206ENST00000487938 MRPS28Q9Y2Q9 187 aaKnown RBP15.89■□□□□ 0.13
VIM-206ENST00000487938 C13orf42A0A1B0GVH6 325 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 QDPRP09417 244 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 SLC25A4P12235 298 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 MSX1P28360 303 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 CASRP41180 1078 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 GABREP78334 506 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 ACY1Q03154 408 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 TMEM176BQ3YBM2 270 aaPredicted RBP15.88■□□□□ 0.13
VIM-206ENST00000487938 PLAC9Q5JTB6 97 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 OR5AS1Q8N127 324 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 RASL12Q9NYN1 266 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 ETV2O00321 342 aaPredicted RBP15.88■□□□□ 0.13
VIM-206ENST00000487938 TRAF3IP2O43734 574 aaPredicted RBP15.88■□□□□ 0.13
VIM-206ENST00000487938 ZFAND5O76080 213 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 IL2RAP01589 272 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 SLC25A53Q5H9E4 307 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 PRAMEF20Q5VT98 475 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 FAM57BQ71RH2 274 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 BOLLQ8N9W6 283 aaKnown RBP15.88■□□□□ 0.13
VIM-206ENST00000487938 DTWD2Q8NBA8 298 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 RNF138Q8WVD3 245 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 CRB3Q9BUF7 120 aa15.88■□□□□ 0.13
VIM-206ENST00000487938 OR2F2O95006 317 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 HCKP08631 526 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 ZNF17P17021 662 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 MPZP25189 248 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 STARD6P59095 220 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 CCL7P80098 99 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 OR2F1Q13607 317 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 SLC25A47Q6Q0C1 308 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 ACOT7LQ6ZUV0 252 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 OR2M3Q8NG83 312 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 A0A1W2PQM1 296 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 C5orf63A6NC05 138 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 C5orf51A6NDU8 294 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 BCL2L11O43521 198 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 ZNF43P17038 809 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 CX3CR1P49238 355 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 ZMYND11Q15326 602 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 MICBQ29980 383 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 ELP2Q6IA86 826 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 NAA40Q86UY6 237 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 SHDQ96IW2 340 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 GPER1Q99527 375 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 RARRES3Q9UL19 164 aa15.87■□□□□ 0.13
VIM-206ENST00000487938 E9PLN8 166 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 APOC3P02656 99 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 HLA-GP17693 338 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 TMEM50BP56557 158 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 ATRAIDQ6UW56 229 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 UNQ6126/PRO20091Q6UXV3 157 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 ZNF283Q8N7M2 679 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 WDSUB1Q8N9V3 476 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 THAP6Q8TBB0 222 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 RAB3CQ96E17 227 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 C1orf147Q96MC9 270 aaPredicted RBP15.86■□□□□ 0.13
VIM-206ENST00000487938 SPSB2Q99619 263 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 PNRC2Q9NPJ4 139 aaKnown RBP15.86■□□□□ 0.13
VIM-206ENST00000487938 FSCN3Q9NQT6 498 aa15.86■□□□□ 0.13
VIM-206ENST00000487938 ZNF726A6NNF4 738 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 CDK2AP1O14519 115 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 CDC14BO60729 498 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 RAD51DO75771 328 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 ARHGDIBP52566 201 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 ZNF345Q14585 488 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 SGCAQ16586 387 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 SPEM1Q8N4L4 309 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 OXGR1Q96P68 337 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 RASL10BQ96S79 203 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 TAS2R3Q9NYW6 316 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 MBD2Q9UBB5 411 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 PISDQ9UG56 409 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 EML6Q6ZMW3 1958 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 GDF9O60383 454 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 CRTAPO75718 401 aaPredicted RBP15.85■□□□□ 0.13
VIM-206ENST00000487938 CHRM2P08172 466 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 NPY4RP50391 375 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 OR2W3Q7Z3T1 314 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 ARMC10Q8N2F6 343 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 EIF4E3Q8N5X7 224 aaKnown RBP15.85■□□□□ 0.13
VIM-206ENST00000487938 OR5D18Q8NGL1 313 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 OR6X1Q8NH79 312 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 ZC3H10Q96K80 434 aaKnown RBP15.85■□□□□ 0.13
VIM-206ENST00000487938 DEFB126Q9BYW3 111 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 PRR13Q9NZ81 148 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 ADAMTS9Q9P2N4 1935 aa15.85■□□□□ 0.13
VIM-206ENST00000487938 IGHV5-10-1A0A0J9YXX1 117 aa15.84■□□□□ 0.13
VIM-206ENST00000487938 F5H0A9 414 aaPredicted RBP15.84■□□□□ 0.13
VIM-206ENST00000487938 SULT2B1O00204 365 aa15.84■□□□□ 0.13
VIM-206ENST00000487938 TOX3O15405 576 aaPredicted RBP15.84■□□□□ 0.13
VIM-206ENST00000487938 SCGNO76038 276 aa15.84■□□□□ 0.13
VIM-206ENST00000487938 DUS4LO95620 317 aaKnown RBP15.84■□□□□ 0.13
VIM-206ENST00000487938 PI3P19957 117 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms