RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PSMA1P25786 263 aaKnown RBP14.67□□□□□ -0.06
VIM-205ENST00000485947 GABRA5P31644 462 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 EFNA4P52798 201 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 SNRPD2P62316 118 aaKnown RBP14.67□□□□□ -0.06
VIM-205ENST00000485947 ECH1Q13011 328 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 ALKBH1Q13686 389 aaKnown RBP14.67□□□□□ -0.06
VIM-205ENST00000485947 TRAM1Q15629 374 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 ZNF829Q3KNS6 432 aaPredicted RBP14.67□□□□□ -0.06
VIM-205ENST00000485947 CCDC92Q53HC0 331 aaPredicted RBP14.67□□□□□ -0.06
VIM-205ENST00000485947 ELFN2Q5R3F8 820 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 DMKNQ6E0U4 476 aaPredicted RBP14.67□□□□□ -0.06
VIM-205ENST00000485947 CLEC2AQ6UVW9 174 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 GDPGP1Q6ZNW5 385 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 SMIM19Q96E16 107 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 ATF6BQ99941 703 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 MYOZ1Q9NP98 299 aaPredicted RBP14.67□□□□□ -0.06
VIM-205ENST00000485947 B3GNT2Q9NY97 397 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 PLEK2Q9NYT0 353 aa14.67□□□□□ -0.06
VIM-205ENST00000485947 RSL24D1Q9UHA3 163 aaKnown RBP14.67□□□□□ -0.06
VIM-205ENST00000485947 GPRIN2O60269 458 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 UBL3O95164 117 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 F12P00748 615 aaPredicted RBP14.66□□□□□ -0.06
VIM-205ENST00000485947 APOC1P02654 83 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 MMP7P09237 267 aaPredicted RBP14.66□□□□□ -0.06
VIM-205ENST00000485947 SLC25A16P16260 332 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 ZNF32P17041 273 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 GALP22466 123 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 HSD11B1P28845 292 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 CCR9P51686 369 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 GTF2A1P52655 376 aaPredicted RBP14.66□□□□□ -0.06
VIM-205ENST00000485947 TAF13Q15543 124 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 GSG1Q2KHT4 349 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 ZFP41Q8N8Y5 198 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 ISOC1Q96CN7 298 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 DOK1Q99704 481 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 MDFIQ99750 246 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 COQ7Q99807 217 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 OR2H1Q9GZK4 316 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 MOB1AQ9H8S9 216 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 STUB1Q9UNE7 303 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 SF3B6Q9Y3B4 125 aaKnown RBP14.66□□□□□ -0.06
VIM-205ENST00000485947 GRIP1Q9Y3R0 1128 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 SPEF1Q9Y4P9 236 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 R4GMQ9 66 aa14.66□□□□□ -0.06
VIM-205ENST00000485947 STAB1Q9NY15 2570 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 TRBV2A0A0J9YWF9 115 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 RNF223E7ERA6 249 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 SSX4O60224 188 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 DOK2O60496 412 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 NDUFS7O75251 213 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 SRSF10O75494 262 aaKnown RBP14.65□□□□□ -0.06
VIM-205ENST00000485947 RPP14O95059 124 aaKnown RBP14.65□□□□□ -0.06
VIM-205ENST00000485947 COX5BP10606 129 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 PSMB10P40306 273 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 MMP16P51512 607 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 MST1LQ2TV78 715 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 FOXB2Q5VYV0 432 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 TMEM53Q6P2H8 277 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 ARL9Q6T311 187 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 SPATC1Q76KD6 591 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 MS4A15Q8N5U1 240 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 OR2G2Q8NGZ5 317 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 RNF166Q96A37 237 aaPredicted RBP14.65□□□□□ -0.06
VIM-205ENST00000485947 PGLYRP3Q96LB9 341 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 KCNJ15Q99712 375 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 RNF121Q9H920 327 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 ZNF224Q9NZL3 707 aa14.65□□□□□ -0.06
VIM-205ENST00000485947 SIRT4Q9Y6E7 314 aaPredicted RBP14.65□□□□□ -0.06
VIM-205ENST00000485947 PNMA8CA0A1B0GUJ8 204 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 ACOD1A6NK06 481 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 TMEM212A6NML5 194 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 NDUFS8O00217 210 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 SYNGR3O43761 229 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 AIREO43918 545 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 HLA-DPB1P04440 258 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 GADD45AP24522 165 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 OTX1P32242 354 aaPredicted RBP14.64□□□□□ -0.07
VIM-205ENST00000485947 EVX1P49640 407 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 PPOXP50336 477 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 GDI2P50395 445 aaKnown RBP14.64□□□□□ -0.07
VIM-205ENST00000485947 IDH3GP51553 393 aaPredicted RBP14.64□□□□□ -0.07
VIM-205ENST00000485947 PSMA6P60900 246 aaKnown RBP14.64□□□□□ -0.07
VIM-205ENST00000485947 PSG4Q00888 419 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 ADIPOQQ15848 244 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 CD200R1LQ6Q8B3 271 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 SLC16A12Q6ZSM3 486 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 MDP1Q86V88 176 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 ALDH16A1Q8IZ83 802 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 SPTSSAQ969W0 71 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 C4orf45Q96LM5 186 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 NAA50Q9GZZ1 169 aaKnown RBP14.64□□□□□ -0.07
VIM-205ENST00000485947 COMMD4Q9H0A8 199 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 WNT5BQ9H1J7 359 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 PLK3Q9H4B4 646 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 SSR3Q9UNL2 185 aa14.64□□□□□ -0.07
VIM-205ENST00000485947 IGHV2OR16-5A0A0B4J2B6 119 aa14.63□□□□□ -0.07
VIM-205ENST00000485947 OR6C6A6NF89 314 aa14.63□□□□□ -0.07
VIM-205ENST00000485947 LOC110117498-PIK3R3F6TDL0 507 aa14.63□□□□□ -0.07
VIM-205ENST00000485947 SERPINA3P01011 423 aa14.63□□□□□ -0.07
VIM-205ENST00000485947 ERCC1P07992 297 aaPredicted RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms