RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 IGLV3-12A0A075B6K2 115 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 KCNE1BA0A087WTH5 132 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 A0A1B0GX78 115 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 A0A1W2PNV4 684 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 A0A1W2PQ72 361 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 FAM159BA6NKW6 160 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 CDC7O00311 574 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 SCAMP2O15127 329 aaKnown RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 RAD51CO43502 376 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 CGAP01215 116 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 CD55P08174 381 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 ACADSP16219 412 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 ZNF24P17028 368 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 RPA3P35244 121 aaPredicted RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 SLC26A3P40879 764 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 RFC3P40938 356 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 DCDP81605 110 aaKnown RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 PDIA2Q13087 525 aaKnown RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 FAM53BQ14153 422 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 PDK3Q15120 406 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 GGTA1PQ4G0N0 100 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 HIGD2BQ4VC39 106 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 TMEM225Q6GV28 225 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 NIPAL1Q6NVV3 410 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 PRMT9Q6P2P2 845 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 SYT10Q6XYQ8 523 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 GTSCR1Q86UQ5 136 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 MMGT1Q8N4V1 131 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 CSNK1A1LQ8N752 337 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 TTC29Q8NA56 475 aaPredicted RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 FBXO36Q8NEA4 188 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 MNS1Q8NEH6 495 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 OR9A4Q8NGU2 314 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 PYROXD1Q8WU10 500 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 SKA2Q8WVK7 121 aaPredicted RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 CDKL2Q92772 493 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 SH3YL1Q96HL8 342 aaPredicted RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 CCT7Q99832 543 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 SELENOSQ9BQE4 189 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 NXF5Q9H1B4 397 aaKnown RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 FAM60AQ9NP50 221 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 RAB18Q9NP72 206 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 MRPS30Q9NP92 439 aaKnown RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 PNO1Q9NRX1 252 aaKnown RBP4.02□□□□□ -1.77
UPF3A-205ENST00000479712 RPH3ALQ9UNE2 315 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 SNX24Q9Y343 169 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 FAM215AQ9Y5M1 114 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 PLCE1Q9P212 2302 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 MUC4Q99102 2169 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 KIAA1549Q9HCM3 1950 aa4.02□□□□□ -1.77
UPF3A-205ENST00000479712 IGKV1-8A0A0C4DH67 115 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 METTL21EPA6NDL7 271 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 VSTM2BA6NLU5 285 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 SRRM5B3KS81 715 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 ARPC3O15145 178 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 SNNO75324 88 aaPredicted RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 WISP3O95389 354 aaPredicted RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 C1QAP02745 245 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 ZNF44P15621 663 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 IMPA1P29218 277 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 CDKN2DP55273 166 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 ATP6V0D1P61421 351 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 RPS15AP62244 130 aaKnown RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 PAX2Q02962 417 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 RIPPLY1Q0D2K3 151 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 ST3GAL3Q11203 375 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 RIPK1Q13546 671 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 NDUFA9Q16795 377 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 CCSMST1Q4G0I0 132 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 NKAIN1Q4KMZ8 207 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 EIPR1Q53HC9 387 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 FAM71F2Q6NXP2 309 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 C8orf74Q6P047 294 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 FAHD2BQ6P2I3 314 aaPredicted RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 AGTRAPQ6RW13 159 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 CPNE9Q8IYJ1 553 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 ZNF679Q8IYX0 411 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 ZBED8Q8IZ13 594 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 SLC38A6Q8IZM9 456 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 TCAIMQ8N3R3 496 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 ZCCHC7Q8N3Z6 543 aaKnown RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 TBC1D19Q8N5T2 526 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 AENQ8WTP8 325 aaKnown RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 EEF1AKMT1Q8WVE0 214 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 EMG1Q92979 244 aaKnown RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 FAHD2AQ96GK7 314 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 C7orf34Q96L11 122 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 AMDHD1Q96NU7 426 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 OR5B2Q96R09 309 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 OR2A5Q96R48 311 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 GPR22Q99680 433 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 NPAS2Q99743 824 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 NRTNQ99748 197 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 DPH7Q9BTV6 452 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 DERL2Q9GZP9 239 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 METTL17Q9H7H0 456 aaPredicted RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 C14orf105Q9NVL8 296 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 PIPOXQ9P0Z9 390 aa4.01□□□□□ -1.77
UPF3A-205ENST00000479712 STOX2Q9P2F5 926 aaPredicted RBP4.01□□□□□ -1.77
UPF3A-205ENST00000479712 DHCR7Q9UBM7 475 aaKnown RBP4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms