RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 RRM2BQ7LG56 351 aa14.05□□□□□ -0.16
VIM-204ENST00000478746 OFCC1Q8IZS5 231 aa14.05□□□□□ -0.16
VIM-204ENST00000478746 PNKDQ8N490 385 aa14.05□□□□□ -0.16
VIM-204ENST00000478746 CCL13Q99616 98 aa14.05□□□□□ -0.16
VIM-204ENST00000478746 GGT3PA6NGU5 568 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 J3KTA2 159 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 MPIG6BO95866 241 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 CRABP1P29762 137 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 GGT2P36268 569 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 CDKN2AP42771 156 aaKnown RBP14.04□□□□□ -0.16
VIM-204ENST00000478746 TPTEP56180 551 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 TRAP1Q12931 704 aaKnown RBP14.04□□□□□ -0.16
VIM-204ENST00000478746 MICBQ29980 383 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 FOXB2Q5VYV0 432 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 PTCHD4Q6ZW05 846 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 ADCK1Q86TW2 530 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 Q8N7P7 452 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 BEND2Q8NDZ0 799 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 CLPTM1LQ96KA5 538 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 TSSK2Q96PF2 358 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 SSX3Q99909 188 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 ATF6BQ99941 703 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 FAM234AQ9H0X4 552 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 MMP28Q9H239 520 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 NRIP3Q9NQ35 241 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 MAB21L2Q9Y586 359 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 IER3IP1Q9Y5U9 82 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 SNX13Q9Y5W8 968 aa14.04□□□□□ -0.16
VIM-204ENST00000478746 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.03□□□□□ -0.16
VIM-204ENST00000478746 A0A1B0GW55 424 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 FFAR1O14842 300 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 PTP4A3O75365 173 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 NDUFB2O95178 105 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DUX4L2P0CJ85 424 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DUX4L3P0CJ86 424 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DUX4L4P0CJ87 422 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DUX4L5P0CJ88 424 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DUX4L6P0CJ89 424 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DUX4L7P0CJ90 424 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 MUC1P15941 1255 aaPredicted RBP14.03□□□□□ -0.16
VIM-204ENST00000478746 UBE2E1P51965 193 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 MZT1Q08AG7 82 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 ACSM1Q08AH1 577 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 LY6EQ16553 131 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 C11orf87Q6NUJ2 197 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DNM1P34Q6PK57 102 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DUX4L9Q6RFH8 374 aaPredicted RBP14.03□□□□□ -0.16
VIM-204ENST00000478746 CFAP77Q6ZQR2 320 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 SLC36A1Q7Z2H8 476 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 TSEN54Q7Z6J9 526 aaKnown RBP14.03□□□□□ -0.16
VIM-204ENST00000478746 LINC00346Q8IVM7 164 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DTX3Q8N9I9 347 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 OR8J3Q8NGG0 315 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 OR2AJ1Q8NGZ0 328 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 R3HDM4Q96D70 268 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 SRA1Q9HD15 236 aaKnown RBP14.03□□□□□ -0.16
VIM-204ENST00000478746 C14orf119Q9NWQ9 140 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 MRPL15Q9P015 296 aaKnown RBP14.03□□□□□ -0.16
VIM-204ENST00000478746 DUX4Q9UBX2 424 aa14.03□□□□□ -0.16
VIM-204ENST00000478746 DCTN6O00399 190 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 NDUFB3O43676 98 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 PPP1R3DO95685 299 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 IFNW1P05000 195 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 ELF3P78545 371 aaPredicted RBP14.02□□□□□ -0.17
VIM-204ENST00000478746 ZNF92Q03936 586 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 WDR38Q5JTN6 314 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 SLC18B1Q6NT16 456 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 OR4F17Q8NGA8 305 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 TNFRSF14Q92956 283 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 OR4F4Q96R69 305 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 DCTN5Q9BTE1 182 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 RANBP3Q9H6Z4 567 aaPredicted RBP14.02□□□□□ -0.17
VIM-204ENST00000478746 RAB18Q9NP72 206 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 PRPF19Q9UMS4 504 aaKnown RBP14.02□□□□□ -0.17
VIM-204ENST00000478746 B9D1Q9UPM9 204 aa14.02□□□□□ -0.17
VIM-204ENST00000478746 FBXO24O75426 580 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 GRK5P34947 590 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 IKZF1Q13422 519 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 PCK2Q16822 640 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 SLC36A3Q495N2 470 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 NCR3LG1Q68D85 454 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 FAM216BQ8N7L0 139 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 OR51G2Q8NGK0 314 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 LRRC29Q8WV35 223 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 H1FXQ92522 213 aaKnown RBP14.01□□□□□ -0.17
VIM-204ENST00000478746 GPX7Q96SL4 187 aaPredicted RBP14.01□□□□□ -0.17
VIM-204ENST00000478746 RNPEPL1Q9HAU8 725 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 SIGLEC7Q9Y286 467 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 TMEM5Q9Y2B1 443 aa14.01□□□□□ -0.17
VIM-204ENST00000478746 IGLV1-36A0A0B4J1U3 117 aa14□□□□□ -0.17
VIM-204ENST00000478746 M0R135 149 aa14□□□□□ -0.17
VIM-204ENST00000478746 FXYD1O00168 92 aa14□□□□□ -0.17
VIM-204ENST00000478746 BHLHE40O14503 412 aa14□□□□□ -0.17
VIM-204ENST00000478746 TXNDC12O95881 172 aa14□□□□□ -0.17
VIM-204ENST00000478746 RPS6KA3P51812 740 aa14□□□□□ -0.17
VIM-204ENST00000478746 SNAI3Q3KNW1 292 aa14□□□□□ -0.17
VIM-204ENST00000478746 LRRC10Q5BKY1 277 aa14□□□□□ -0.17
VIM-204ENST00000478746 DEFB121Q5J5C9 76 aa14□□□□□ -0.17
VIM-204ENST00000478746 METTL21CQ5VZV1 264 aa14□□□□□ -0.17
VIM-204ENST00000478746 PGBD2Q6P3X8 592 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms