RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TRIM25Q14258 630 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 HLXQ14774 488 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 FAM98BQ52LJ0 330 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 CLEC12AQ5QGZ9 265 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 FOXB2Q5VYV0 432 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 LCN8Q6JVE9 175 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 SLC18B1Q6NT16 456 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 SLC27A4Q6P1M0 643 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 FAHD2BQ6P2I3 314 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 CFAP77Q6ZQR2 320 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 Q6ZR03 302 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 RASSF6Q6ZTQ3 369 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 DHFR2Q86XF0 187 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 LINC00346Q8IVM7 164 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 OR5AS1Q8N127 324 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 SPICQ8N5J4 248 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 ZNF283Q8N7M2 679 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 CCDC197Q8NCU1 140 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 PROKR2Q8NFJ6 384 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 OR4M2Q8NGB6 313 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 OR9Q2Q8NGE9 314 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 OR4C15Q8NGM1 316 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 ST7LQ8TDW4 575 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 FAHD2AQ96GK7 314 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 ZNF582Q96NG8 517 aaPredicted RBP5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 PITX2Q99697 317 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 ATF6BQ99941 703 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 BTBD10Q9BSF8 475 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 C19orf24Q9BVV8 132 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 FN3KQ9H479 309 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 EGLN3Q9H6Z9 239 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 G6PC2Q9NQR9 355 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 TMEM106BQ9NUM4 274 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 TBC1D23Q9NUY8 699 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 IL19Q9UHD0 177 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 KCNG2Q9UJ96 466 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 PRPF19Q9UMS4 504 aaKnown RBP5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 PPP1R3CQ9UQK1 317 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 NPTNQ9Y639 398 aa5.73□□□□□ -1.49
CCDC88A-213ENST00000476903 A0A0A6YYJ9 748 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 IQCF6A8MYZ5 107 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 F5H5K5 113 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 IFNL4K9M1U5 179 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 PRODHO43272 600 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 FOXH1O75593 365 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 GASTP01350 101 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 IGHV2-70P01814 119 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 SBK2P0C263 348 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ACSM4P0C7M7 580 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ZNF823P16415 610 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 SELEP16581 610 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 GGT2P36268 569 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 SRP9P49458 86 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ERFP50548 548 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 BTG1P62324 171 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 LCN2P80188 198 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 SRSF2Q01130 221 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 TRAP1Q12931 704 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 MALLQ13021 153 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 KRTAP27-1Q3LI81 207 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 TMEM155Q4W5P6 130 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 SPRNQ5BIV9 151 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 DCAF12L2Q5VW00 463 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 OR2T5Q6IEZ7 315 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 OR2T2Q6IF00 324 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ZNF770Q6IQ21 691 aaPredicted RBP5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 COLCA1Q6ZS62 124 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ZNF771Q7L3S4 317 aaPredicted RBP5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ARL6IP6Q8N6S5 226 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ATG16L2Q8NAA4 619 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 CYB561A3Q8NBI2 242 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 AQP11Q8NBQ7 271 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 OR8G5Q8NG78 346 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 OR13G1Q8NGZ3 307 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 OR2T4Q8NH00 348 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 OR2T29Q8NH02 315 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ITLN1Q8WWA0 313 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 ASB9Q96DX5 294 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 LRGUKQ96M69 825 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 OR2V2Q96R30 315 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 HCAR1Q9BXC0 346 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 C1QTNF5Q9BXJ0 243 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 REEP1Q9H902 201 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 PNRC2Q9NPJ4 139 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 IL20Q9NYY1 176 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 UBAP1Q9NZ09 502 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 CYB5R1Q9UHQ9 305 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 BAIAP2Q9UQB8 552 aa5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 SAMHD1Q9Y3Z3 626 aaKnown RBP5.72□□□□□ -1.49
CCDC88A-213ENST00000476903 PPIAL4EA0A075B759 164 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 LOC105371242A0A075B767 164 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 PPIAL4CA0A0B4J2A2 164 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 TRIM64CA6NLI5 447 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 PPIAL4DF5H284 164 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 M0R135 149 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 DYNC1I1O14576 645 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 LCATP04180 440 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 PPIAL4FP0DN26 164 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 RAP2AP10114 183 aa5.71□□□□□ -1.5
CCDC88A-213ENST00000476903 PYCR1P32322 319 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms