RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CH25HO95992 272 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 GRPP07492 148 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 RPSAP08865 295 aaKnown RBP3.7□□□□□ -1.82
USP4-209ENST00000475873 ASAH2BP0C7U1 165 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 RBMY1A1P0DJD3 496 aaKnown RBP3.7□□□□□ -1.82
USP4-209ENST00000475873 NR2F1P10589 423 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 PRPS1L1P21108 318 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 AZGP1P25311 298 aaKnown RBP3.7□□□□□ -1.82
USP4-209ENST00000475873 GGT2P36268 569 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 RPL3P39023 403 aaKnown RBP3.7□□□□□ -1.82
USP4-209ENST00000475873 CDKN2CP42773 168 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 CENPAP49450 140 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 GSK3BP49841 420 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 RPS6KA3P51812 740 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 MNAT1P51948 309 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 UGT2B15P54855 530 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 CDH12P55289 794 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 DLX6P56179 175 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 CAV3P56539 151 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 MXRA7P84157 204 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 GK2Q14410 553 aaPredicted RBP3.7□□□□□ -1.82
USP4-209ENST00000475873 CASP8Q14790 479 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 SEC23BQ15437 767 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 ZNF74Q16587 644 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 LRRC10Q5BKY1 277 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 CEP85LQ5SZL2 805 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 ZNF626Q68DY1 528 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 FAM53AQ6NSI3 398 aaPredicted RBP3.7□□□□□ -1.82
USP4-209ENST00000475873 PLBD1Q6P4A8 553 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 ZDHHC24Q6UX98 284 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 SLC36A1Q7Z2H8 476 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 C10orf53Q8N6V4 93 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 OR5K1Q8NHB7 308 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 SLC38A5Q8WUX1 472 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 LRRC29Q8WV35 223 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 ST6GALNAC6Q969X2 333 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 FOXRED1Q96CU9 486 aaPredicted RBP3.7□□□□□ -1.82
USP4-209ENST00000475873 RASD2Q96D21 266 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 MALSU1Q96EH3 234 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 ATF6BQ99941 703 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 SLC25A33Q9BSK2 321 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 HCAR1Q9BXC0 346 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 DPH5Q9H2P9 285 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 LIN7BQ9HAP6 207 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 SMURF2Q9HAU4 748 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 SCRT2Q9NQ03 307 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 SNTG1Q9NSN8 517 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 ZIM2Q9NZV7 527 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 P2RX2Q9UBL9 471 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 SLC25A10Q9UBX3 287 aaPredicted RBP3.7□□□□□ -1.82
USP4-209ENST00000475873 ZNF391Q9UJN7 358 aa3.7□□□□□ -1.82
USP4-209ENST00000475873 VPS13BQ7Z7G8 4022 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 hCG_1807616A0A1W2PRN6 198 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 A6NLC8 198 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 TMEM114B3SHH9 223 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 C12orf77C9JDV5 145 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 M0QX08 132 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 CCRL2O00421 344 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 AZIN1O14977 448 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 SIGLEC5O15389 551 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 SGCEO43556 437 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 TPST1O60507 370 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 LYPLA1O75608 230 aaPredicted RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 OR2F2O95006 317 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 MT-ATP6P00846 226 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 ARG1P05089 322 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 BCHEP06276 602 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 MUC1P15941 1255 aaPredicted RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 NDUFB7P17568 137 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 TAC1P20366 129 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 ECHS1P30084 290 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 CDX1P47902 265 aaPredicted RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 SLC25A1P53007 311 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 LGALS4P56470 323 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 GMFBP60983 142 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 RPL18Q07020 188 aaKnown RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 TRAP1Q12931 704 aaKnown RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 ECH1Q13011 328 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 BLMHQ13867 455 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 ZNF273Q14593 569 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 OR8G1Q15617 311 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 MICBQ29980 383 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 C9orf152Q5JTZ5 239 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 C6orf136Q5SQH8 315 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 KANK2Q63ZY3 851 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 FAM91A1Q658Y4 838 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 TMEM200BQ69YZ2 307 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 ZNF770Q6IQ21 691 aaPredicted RBP3.69□□□□□ -1.82
USP4-209ENST00000475873 WDR82Q6UXN9 313 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 LINC00114Q6XXX2 140 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 NAA40Q86UY6 237 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 ZNF429Q86V71 674 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 LYPD6Q86Y78 171 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 SLC22A9Q8IVM8 553 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 FAM185AQ8N0U4 392 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 NATD1Q8N6N6 113 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 RNF152Q8N8N0 203 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 PLPP7Q8NBV4 271 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 ZNRF1Q8ND25 227 aa3.69□□□□□ -1.82
USP4-209ENST00000475873 OR8J2Q8NGG1 315 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms