RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ESCO2Q56NI9 601 aa11.77□□□□□ -0.53
UPF3A-204ENST00000475218 DPY19L4Q7Z388 723 aa11.77□□□□□ -0.53
UPF3A-204ENST00000475218 OR56B2PQ8NGI1 322 aa11.77□□□□□ -0.53
UPF3A-204ENST00000475218 SPRYD4Q8WW59 207 aaPredicted RBP11.77□□□□□ -0.53
UPF3A-204ENST00000475218 ADAT1Q9BUB4 502 aaKnown RBP11.77□□□□□ -0.53
UPF3A-204ENST00000475218 ABHD6Q9BV23 337 aa11.77□□□□□ -0.53
UPF3A-204ENST00000475218 SSBP3Q9BWW4 388 aaPredicted RBP11.77□□□□□ -0.53
UPF3A-204ENST00000475218 CTSZQ9UBR2 303 aa11.77□□□□□ -0.53
UPF3A-204ENST00000475218 TMEM89A2RUT3 159 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 AQP12BA6NM10 295 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 RIIAD1A6NNX1 92 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 ZNF878C9JN71 531 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 PSMB10P40306 273 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 COMPP49747 757 aaPredicted RBP11.76□□□□□ -0.53
UPF3A-204ENST00000475218 OR8G1Q15617 311 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 WDR86Q86TI4 376 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 AQP12AQ8IXF9 295 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 RNF133Q8WVZ7 376 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 NEIL1Q96FI4 390 aaPredicted RBP11.76□□□□□ -0.53
UPF3A-204ENST00000475218 SUCNR1Q9BXA5 334 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 PPIAL4AQ9Y536 164 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 PKD1L1Q8TDX9 2849 aa11.76□□□□□ -0.53
UPF3A-204ENST00000475218 IGHV2-70DA0A0C4DH43 119 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 IFNGP01579 166 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 IGHV4-38-2P0DP08 117 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 ZNF3P17036 446 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 PRKACGP22612 351 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 EIF2B1Q14232 305 aaKnown RBP11.75□□□□□ -0.53
UPF3A-204ENST00000475218 GK3PQ14409 553 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 ZNF826PQ6ZT77 177 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 TRPM8Q7Z2W7 1104 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 SIGLECL1Q8N7X8 197 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 TEX47Q8TBZ9 253 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 ERGIC1Q969X5 290 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 SGK3Q96BR1 496 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 LRGUKQ96M69 825 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 NTN4Q9HB63 628 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 MRPL15Q9P015 296 aaKnown RBP11.75□□□□□ -0.53
UPF3A-204ENST00000475218 PDP1Q9P0J1 537 aaPredicted RBP11.75□□□□□ -0.53
UPF3A-204ENST00000475218 MIOXQ9UGB7 285 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 OR5V1Q9UGF6 321 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 NUP50Q9UKX7 468 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 KLHDC2Q9Y2U9 406 aa11.75□□□□□ -0.53
UPF3A-204ENST00000475218 TCRBV3S1A0A5B6 114 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 GGT3PA6NGU5 568 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 C22orf46C9J442 243 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 H3BN98 237 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 GMDSO60547 372 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 GLCEO94923 617 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 CPT2P23786 658 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 CFPP27918 469 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 GSTT1P30711 240 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 OPRL1P41146 370 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 CX3CR1P49238 355 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 GNB2P62879 340 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 UBA52P62987 128 aaKnown RBP11.74□□□□□ -0.53
UPF3A-204ENST00000475218 FAM3AP98173 230 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 CDK5Q00535 292 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 GINS1Q14691 196 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 ARMCX4Q5H9R4 360 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 DOK3Q7L591 496 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 SLC16A9Q7RTY1 509 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 ERI1Q8IV48 349 aaKnown RBP11.74□□□□□ -0.53
UPF3A-204ENST00000475218 C11orf53Q8IXP5 236 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 BPIFB2Q8N4F0 458 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 PAPD5Q8NDF8 572 aaKnown RBP11.74□□□□□ -0.53
UPF3A-204ENST00000475218 OR6N2Q8NGY6 317 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 RAB40AQ8WXH6 277 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 INTS14Q96SY0 518 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 N6AMT1Q9Y5N5 214 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 hCG_38984A0A1B0GV85 526 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 LRRC30A6NM36 301 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 SELENOFO60613 162 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 PITPNBP48739 271 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 ZNF121P58317 390 aaPredicted RBP11.74□□□□□ -0.53
UPF3A-204ENST00000475218 WDR25Q64LD2 544 aaPredicted RBP11.74□□□□□ -0.53
UPF3A-204ENST00000475218 PLBD1Q6P4A8 553 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 DCDC5Q6ZRR9 648 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 C1orf87Q8N0U7 546 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 GCSAMQ8N6F7 178 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 BBS1Q8NFJ9 593 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 UPRTQ96BW1 309 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 ZMYND19Q96E35 227 aaPredicted RBP11.74□□□□□ -0.53
UPF3A-204ENST00000475218 MRI1Q9BV20 369 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 SLC22A4Q9H015 551 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 SMURF1Q9HCE7 757 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 BATF3Q9NR55 127 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 POMPQ9Y244 141 aa11.74□□□□□ -0.53
UPF3A-204ENST00000475218 IGHV3OR16-10A0A075B7F0 116 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 KIR2DS1A0A191URI9 304 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 TRIM77I1YAP6 450 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 PLATP00750 562 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 LHBP01229 141 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 PPIAL4GP0DN37 164 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 EGR1P18146 543 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 SLC2A5P22732 501 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 BLVRAP53004 296 aa11.73□□□□□ -0.53
UPF3A-204ENST00000475218 GRB2P62993 217 aaKnown RBP11.73□□□□□ -0.53
UPF3A-204ENST00000475218 ELF3P78545 371 aaPredicted RBP11.73□□□□□ -0.53
UPF3A-204ENST00000475218 TAF13Q15543 124 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms