RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 HOXB1P14653 301 aaPredicted RBP8.16□□□□□ -1.1
VPS52-216ENST00000471309 STOMP27105 288 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 NR4A2P43354 598 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 CAPZA1P52907 286 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 RAB1AP62820 205 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 IFITM3Q01628 133 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 PLP2Q04941 152 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 NCOA6Q14686 2063 aaPredicted RBP8.16□□□□□ -1.1
VPS52-216ENST00000471309 P2RY6Q15077 328 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 RAB11BQ15907 218 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 GABRA6Q16445 453 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 RGS21Q2M5E4 152 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 C1orf100Q5SVJ3 147 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 ZFHX4Q86UP3 3567 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 SNX29P2Q8IUI4 249 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 ZNF584Q8IVC4 421 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 CDH26Q8IXH8 852 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 C17orf78Q8N4C9 275 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 OR4M1Q8NGD0 313 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 OR13C9Q8NGT0 318 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 RAB40AQ8WXH6 277 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 PP6455Q8WZ26 134 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 SGK3Q96BR1 496 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 STARD4Q96DR4 205 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 SLC25A38Q96DW6 304 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 REEP6Q96HR9 211 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 SOX7Q9BT81 388 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 SFXN3Q9BWM7 321 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 ABCG5Q9H222 651 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 METTL17Q9H7H0 456 aaPredicted RBP8.16□□□□□ -1.1
VPS52-216ENST00000471309 ABCB10Q9NRK6 738 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 RABL2AQ9UBK7 228 aaPredicted RBP8.16□□□□□ -1.1
VPS52-216ENST00000471309 OR5V1Q9UGF6 321 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 RABL2BQ9UNT1 228 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 ZNF835Q9Y2P0 537 aa8.16□□□□□ -1.1
VPS52-216ENST00000471309 ATRXP46100 2492 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 MED12LQ86YW9 2145 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 DOCK7Q96N67 2140 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 hCG_38984A0A1B0GV85 526 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 C5orf49A4QMS7 147 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 J3QW42 95 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 RAD51DO75771 328 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 ALX3O95076 343 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 IL2RAP01589 272 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 SERPINA5P05154 406 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 IL7P13232 177 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 AZGP1P25311 298 aaKnown RBP8.15□□□□□ -1.1
VPS52-216ENST00000471309 HTR2CP28335 458 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 CEACAM8P31997 349 aaPredicted RBP8.15□□□□□ -1.1
VPS52-216ENST00000471309 APLNRP35414 380 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 RANBP1P43487 201 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 PITPNBP48739 271 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 CLDN12P56749 244 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 UBE2NP61088 152 aaKnown RBP8.15□□□□□ -1.1
VPS52-216ENST00000471309 SPOCK1Q08629 439 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 IL18Q14116 193 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 OR8B8Q15620 311 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 GLYATL3Q5SZD4 288 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 STEAP3Q658P3 488 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 GFRALQ6UXV0 394 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 UTS2BQ765I0 119 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 MDP1Q86V88 176 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 LYSMD2Q8IV50 215 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 OR5AS1Q8N127 324 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 SEMA6DQ8NFY4 1073 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 OR2AE1Q8NHA4 323 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 CHPT1Q8WUD6 406 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 AKAP1Q92667 903 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS52-216ENST00000471309 ITFG2Q969R8 447 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 SPSB4Q96A44 273 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 SLC25A28Q96A46 364 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 APOBEC3DQ96AK3 386 aaPredicted RBP8.15□□□□□ -1.1
VPS52-216ENST00000471309 SNRNP40Q96DI7 357 aaKnown RBP8.15□□□□□ -1.1
VPS52-216ENST00000471309 POM121L2Q96KW2 1035 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 ZNF75AQ96N20 296 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 SORCS2Q96PQ0 1159 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 UQCC2Q9BRT2 126 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 CHST5Q9GZS9 411 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 OPA3Q9H6K4 179 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 OBP2BQ9NPH6 170 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 RHBDD3Q9Y3P4 386 aa8.15□□□□□ -1.1
VPS52-216ENST00000471309 USP24Q9UPU5 2620 aa8.15□□□□□ -1.11
VPS52-216ENST00000471309 ASPMQ8IZT6 3477 aa8.15□□□□□ -1.11
VPS52-216ENST00000471309 LOC100289279A0A1B0GTE1 492 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 CIB4A0PJX0 185 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 ICMTO60725 284 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 LYZL6O75951 148 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 TPPPO94811 219 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 HLA-DQB1P01920 261 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 ALDOBP05062 364 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 GLI4P10075 376 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 EDN3P14138 238 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 PRF1P14222 555 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 FAHP16930 419 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 ZNF14P17017 642 aaPredicted RBP8.14□□□□□ -1.11
VPS52-216ENST00000471309 HOXC12P31275 282 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 MAP2K3P46734 347 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 ART1P52961 327 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 DEFA1P59665 94 aa8.14□□□□□ -1.11
VPS52-216ENST00000471309 DEFA3P59666 94 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms