RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TMEM212A6NML5 194 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 OR4C45A6NMZ5 311 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 P2RY10O00398 339 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 UBCP0CG48 685 aaKnown RBP13.54□□□□□ -0.24
USP40-206ENST00000443711 HSMCR30P0CW71 290 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 SELEP16581 610 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 PCMT1P22061 227 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 TTKP33981 857 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 MPV17P39210 176 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 EVX1P49640 407 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 PSG7Q13046 419 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 MOGQ16653 247 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 MSMPQ1L6U9 139 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 ODF4Q2M2E3 257 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 DMKNQ6E0U4 476 aaPredicted RBP13.54□□□□□ -0.24
USP40-206ENST00000443711 KCTD8Q6ZWB6 473 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 RPS4Y2Q8TD47 263 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 LYZL4Q96KX0 146 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 MGLLQ99685 303 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 MRPL37Q9BZE1 423 aaKnown RBP13.54□□□□□ -0.24
USP40-206ENST00000443711 PLK3Q9H4B4 646 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 UBTD1Q9HAC8 227 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 VCX3AQ9NNX9 186 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 GPR84Q9NQS5 396 aa13.54□□□□□ -0.24
USP40-206ENST00000443711 SIRT4Q9Y6E7 314 aaPredicted RBP13.54□□□□□ -0.24
USP40-206ENST00000443711 RAI1Q7Z5J4 1906 aaPredicted RBP13.53□□□□□ -0.24
USP40-206ENST00000443711 IGLV3-9A0A075B6K5 115 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 A0A1B0GTI1 187 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 GGT3PA6NGU5 568 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 MTRF1O75570 445 aaKnown RBP13.53□□□□□ -0.24
USP40-206ENST00000443711 CLPTM1O96005 669 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 IGLV3-1P01715 115 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 IGHV3-13P01766 116 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 ISG15P05161 165 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 CD1AP06126 327 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 ATP6V1B1P15313 513 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 CELP19835 753 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 KITLGP21583 273 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 DDOSTP39656 456 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 GSK3AP49840 483 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 FAM3AP98173 230 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 SLC3A1Q07837 685 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 MLLT11Q13015 90 aaPredicted RBP13.53□□□□□ -0.24
USP40-206ENST00000443711 DOC2BQ14184 412 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 EFNB3Q15768 340 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 UBE2UQ5VVX9 321 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 DOK3Q7L591 496 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 LRP11Q86VZ4 500 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 MUC15Q8N387 334 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 ZFP41Q8N8Y5 198 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 CCDC54Q8NEL0 328 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 SMIM19Q96E16 107 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 SYT3Q9BQG1 590 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 PLEKHF2Q9H8W4 249 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 GPR160Q9UJ42 338 aa13.53□□□□□ -0.24
USP40-206ENST00000443711 PURGQ9UJV8 347 aaKnown RBP13.53□□□□□ -0.24
USP40-206ENST00000443711 DSCAMO60469 2012 aa13.52□□□□□ -0.24
USP40-206ENST00000443711 hCG_38984A0A1B0GV85 526 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 LOC390937A0A1W2PQ73 354 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 TRIM64CA6NLI5 447 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 B9A039 149 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 SYT7O43581 403 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 PLPP2O43688 288 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 TIMM8AO60220 97 aaPredicted RBP13.52□□□□□ -0.25
USP40-206ENST00000443711 ZFPL1O95159 310 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 ZNF12P17014 697 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 ACHEP22303 614 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 CCL1P22362 96 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 MAP2K3P46734 347 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 GPR50Q13585 617 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 TPBGQ13641 420 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 ARMCX4Q5H9R4 360 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 AGAP6Q5VW22 663 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 OR2T2Q6IF00 324 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 C20orf204Q6ZNR8 217 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 RDH10Q8IZV5 341 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 PLPP7Q8NBV4 271 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 UFD1Q92890 307 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 FAM71F1Q96KD3 344 aaPredicted RBP13.52□□□□□ -0.25
USP40-206ENST00000443711 PDCD1LG2Q9BQ51 273 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 HHLA2Q9UM44 414 aa13.52□□□□□ -0.25
USP40-206ENST00000443711 HRNRQ86YZ3 2850 aaPredicted RBP13.51□□□□□ -0.25
USP40-206ENST00000443711 PNMA8CA0A1B0GUJ8 204 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 LOC107986453A0A1B0GWG9 222 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 A0A1W2PPW3 197 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 CD300LBA8K4G0 201 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 IQCF6A8MYZ5 107 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 DHRS3O75911 302 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 DANCRP0C864 163 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 PSMB9P28065 219 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 PRSS12P56730 875 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 OR8B8Q15620 311 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 NEDD8Q15843 81 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 Q6ZSR3 168 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 CSNK2A3Q8NEV1 391 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 GHSRQ92847 366 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 OPALINQ96PE5 141 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 CBLN4Q9NTU7 201 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 TAAR3PQ9P1P4 343 aa13.51□□□□□ -0.25
USP40-206ENST00000443711 FBXO9Q9UK97 447 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms