RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 BRD7Q9NPI1 651 aa12.81□□□□□ -0.36
LIMS3-201ENST00000437679 MRPL15Q9P015 296 aaKnown RBP12.81□□□□□ -0.36
LIMS3-201ENST00000437679 IGHV3-64DA0A0J9YX35 117 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 CCDC182A6NF36 153 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 SAC3D1A6NKF1 404 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 PLPP2O43688 288 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 GMDSO60547 372 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 IRF2P14316 349 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 ANOS1P23352 680 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 CFL1P23528 166 aaKnown RBP12.8□□□□□ -0.36
LIMS3-201ENST00000437679 EPHA2P29317 976 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 SRP14P37108 136 aaKnown RBP12.8□□□□□ -0.36
LIMS3-201ENST00000437679 DDOSTP39656 456 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 MDH2P40926 338 aaKnown RBP12.8□□□□□ -0.36
LIMS3-201ENST00000437679 CD200P41217 278 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 ZNF181Q2M3W8 571 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 TMEM155Q4W5P6 130 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 C12orf73Q69YU5 71 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 KCTD18Q6PI47 426 aaPredicted RBP12.8□□□□□ -0.36
LIMS3-201ENST00000437679 MEPCEQ7L2J0 689 aaKnown RBP12.8□□□□□ -0.36
LIMS3-201ENST00000437679 KRT77Q7Z794 578 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 LRRC28Q86X40 367 aaPredicted RBP12.8□□□□□ -0.36
LIMS3-201ENST00000437679 C1orf87Q8N0U7 546 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 TCEANCQ8N8B7 351 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 OR56B2PQ8NGI1 322 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 OR11L1Q8NGX0 322 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 TMEM163Q8TC26 289 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 ERGIC1Q969X5 290 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 SPSB4Q96A44 273 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 SGK3Q96BR1 496 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 REEP6Q96HR9 211 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 RBM4BQ9BQ04 359 aaKnown RBP12.8□□□□□ -0.36
LIMS3-201ENST00000437679 ADAT1Q9BUB4 502 aaKnown RBP12.8□□□□□ -0.36
LIMS3-201ENST00000437679 NIPAL2Q9H841 368 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 KLHDC2Q9Y2U9 406 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 SVEP1Q4LDE5 3571 aa12.8□□□□□ -0.36
LIMS3-201ENST00000437679 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.79□□□□□ -0.36
LIMS3-201ENST00000437679 SLC22A31A6NKX4 558 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 ANKRD30BLA7E2S9 258 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 CYB5R3P00387 301 aaPredicted RBP12.79□□□□□ -0.36
LIMS3-201ENST00000437679 MRPL3P09001 348 aaKnown RBP12.79□□□□□ -0.36
LIMS3-201ENST00000437679 ALOX5APP20292 161 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 GATA4P43694 442 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 MZT1Q08AG7 82 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 MAB21L1Q13394 359 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 ZMYND11Q15326 602 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 GFOD2Q3B7J2 385 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 NXNL2Q5VZ03 156 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 LRRN1Q6UXK5 716 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 PRSS45Q7RTY3 260 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 KLBQ86Z14 1044 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 MUC20Q8N307 709 aaPredicted RBP12.79□□□□□ -0.36
LIMS3-201ENST00000437679 SPERTQ8NA61 448 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 CNN2Q99439 309 aaKnown RBP12.79□□□□□ -0.36
LIMS3-201ENST00000437679 PKP2Q99959 881 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 RIBC2Q9H4K1 309 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 RGCCQ9H4X1 137 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 TMEM14AQ9Y6G1 99 aa12.79□□□□□ -0.36
LIMS3-201ENST00000437679 M0R129 80 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 FOXH1O75593 365 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 RBMXP38159 391 aaKnown RBP12.78□□□□□ -0.36
LIMS3-201ENST00000437679 HCCSP53701 268 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 PSMA6P60900 246 aaKnown RBP12.78□□□□□ -0.36
LIMS3-201ENST00000437679 FAM3AP98173 230 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 SNCBQ16143 134 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 FAHD2BQ6P2I3 314 aaPredicted RBP12.78□□□□□ -0.36
LIMS3-201ENST00000437679 DEGS2Q6QHC5 323 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 BCDIN3DQ7Z5W3 292 aaKnown RBP12.78□□□□□ -0.36
LIMS3-201ENST00000437679 GID4Q8IVV7 300 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 ASB17Q8WXJ9 295 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 FAHD2AQ96GK7 314 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 RAB3IPQ96QF0 476 aaPredicted RBP12.78□□□□□ -0.36
LIMS3-201ENST00000437679 IL4I1Q96RQ9 567 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 GABARAPL3Q9BY60 117 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 MROQ9BYG7 248 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 FN3KRPQ9HA64 309 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 PATZ1Q9HBE1 687 aaKnown RBP12.78□□□□□ -0.36
LIMS3-201ENST00000437679 LRP12Q9Y561 859 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 ORC6Q9Y5N6 252 aa12.78□□□□□ -0.36
LIMS3-201ENST00000437679 A0A0G2JMP0 313 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 A0A0X1KG70 313 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 hCG_38984A0A1B0GV85 526 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 H3BNX3 289 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 PNPP00491 289 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 THBS2P35442 1172 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 GSK3AP49840 483 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 EFNB1P98172 346 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 AADACL4Q5VUY2 407 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 PRAMEF6Q5VXH4 476 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 FTMTQ8N4E7 242 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 TEX29Q8N6K0 151 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 PLPP7Q8NBV4 271 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 CSNK2A3Q8NEV1 391 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 OR4M2Q8NGB6 313 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 OR8S1Q8NH09 359 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 Q8TCH9 128 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 DVL3Q92997 716 aaPredicted RBP12.77□□□□□ -0.37
LIMS3-201ENST00000437679 MNTQ99583 582 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 G6PC2Q9NQR9 355 aa12.77□□□□□ -0.37
LIMS3-201ENST00000437679 UFSP2Q9NUQ7 469 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms