RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CLDN23Q96B33 292 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 SORCS2Q96PQ0 1159 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 TMUB1Q9BVT8 246 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 SRXN1Q9BYN0 137 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 PBOV1Q9GZY1 135 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 PLEK2Q9NYT0 353 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 FOXJ2Q9P0K8 574 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 STEAP1Q9UHE8 339 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 MAB21L2Q9Y586 359 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 CSAG2Q9Y5P2 127 aa7.4□□□□□ -1.22
CD44-208ENST00000428726 CHCHD2Q9Y6H1 151 aaPredicted RBP7.4□□□□□ -1.22
CD44-208ENST00000428726 IGLV3-12A0A075B6K2 115 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 TRBV5-7A0A0A0MS05 114 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 FAM230AA0A1W2PPH8 454 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 LNP1A1A4G5 178 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 NAP1L6A6NFF2 107 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 WIPF3A6NGB9 483 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 GGT3PA6NGU5 568 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 TPPPO94811 219 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 IFNA7P01567 189 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 IGHMP01871 453 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 NAT1P18440 290 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 GABRR1P24046 479 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 H2BFSP57053 126 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 AKIRIN2Q53H80 203 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 C3orf33Q6P1S2 294 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 SPERTQ8NA61 448 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 OR2M3Q8NG83 312 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 OR6S1Q8NH40 331 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 FGFBP3Q8TAT2 258 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 UBALD1Q8TB05 177 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 ST7LQ8TDW4 575 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 RNF128Q8TEB7 428 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 HAVCR1Q96D42 359 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 ADAT1Q9BUB4 502 aaKnown RBP7.4□□□□□ -1.23
CD44-208ENST00000428726 DEPPQ9NTK1 212 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 CKLFQ9UBR5 152 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 ZNF629Q9UEG4 869 aaPredicted RBP7.4□□□□□ -1.23
CD44-208ENST00000428726 HHLA2Q9UM44 414 aa7.4□□□□□ -1.23
CD44-208ENST00000428726 ANKUB1A6NFN9 424 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 EEF1E1-BLOC1S5C9J1V9 151 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 C9J4A7 227 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 CRTAPO75718 401 aaPredicted RBP7.39□□□□□ -1.23
CD44-208ENST00000428726 ITGA3P26006 1051 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 DUSP1P28562 367 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 PRSS3P35030 304 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 SUCLG1P53597 346 aaKnown RBP7.39□□□□□ -1.23
CD44-208ENST00000428726 ZXDAP98168 799 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 IDO2Q6ZQW0 420 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 MUC20Q8N307 709 aaPredicted RBP7.39□□□□□ -1.23
CD44-208ENST00000428726 OR8B12Q8NGG6 310 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 RBPMSQ93062 196 aaKnown RBP7.39□□□□□ -1.23
CD44-208ENST00000428726 DUSP23Q9BVJ7 150 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 GSX2Q9BZM3 304 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 PRO3102Q9H379 93 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 G6PC2Q9NQR9 355 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 SDHAF2Q9NX18 166 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 GTF3C1Q12789 2109 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 MEIKINA0A087WXM9 373 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 NPIPA2E9PIF3 369 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 NPIPA3F8WFD2 350 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 LDOC1O95751 146 aaPredicted RBP7.39□□□□□ -1.23
CD44-208ENST00000428726 CRABP1P29762 137 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 CX3CR1P49238 355 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 RRADP55042 308 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 CXADRP78310 365 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 MFSD13AQ14CX5 517 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 C3P1Q6ZMU1 363 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 RAB11FIP2Q7L804 512 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 BEST3Q8N1M1 668 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 OR5L2Q8NGL0 311 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 OR6M1Q8NGM8 313 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 ST8SIA1Q92185 356 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 FBXW5Q969U6 566 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 SLC25A28Q96A46 364 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 THOC3Q96J01 351 aaKnown RBP7.39□□□□□ -1.23
CD44-208ENST00000428726 KCNK17Q96T54 332 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 POFUT1Q9H488 388 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 C12orf49Q9H741 205 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 CRLF2Q9HC73 371 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 DIABLOQ9NR28 239 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 GPR173Q9NS66 373 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 RHBDD3Q9Y3P4 386 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 ADAMTS20P59510 1910 aa7.39□□□□□ -1.23
CD44-208ENST00000428726 A0A1W2PPC1 479 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 B8ZZF3 427 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 GLSO94925 669 aaPredicted RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 RAB3DO95716 219 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SULT1A3P0DMM9 295 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SULT1A4P0DMN0 295 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 COX6A1P12074 109 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ZNF20P17024 532 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 GDF1P27539 372 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 OPRM1P35372 400 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 RGS19P49795 217 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 NPY4RP50391 375 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 SUMO3P55854 103 aaPredicted RBP7.38□□□□□ -1.23
CD44-208ENST00000428726 ROM1Q03395 351 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 CSRP2Q16527 193 aa7.38□□□□□ -1.23
CD44-208ENST00000428726 ZNF385CQ66K41 422 aaPredicted RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms