RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SLC25A40Q8TBP6 338 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 CMBLQ96DG6 245 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 OR2J1Q9GZK6 312 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 SLC22A4Q9H015 551 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 PLK3Q9H4B4 646 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 ZNF442Q9H7R0 627 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 EXOSC4Q9NPD3 245 aaKnown RBP8.71□□□□□ -1.01
CD44-207ENST00000425428 CYSLTR2Q9NS75 346 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 CA10Q9NS85 328 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 CISD1Q9NZ45 108 aaKnown RBP8.71□□□□□ -1.01
CD44-207ENST00000425428 ST6GALNAC2Q9UJ37 374 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 ENPP5Q9UJA9 477 aa8.71□□□□□ -1.01
CD44-207ENST00000425428 CADP27708 2225 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.71□□□□□ -1.02
CD44-207ENST00000425428 LOC390937A0A1W2PQ73 354 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 CCDC160A6NGH7 325 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 ANXA2P2A6NMY6 339 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 OR4C45A6NMZ5 311 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 E9PI62 339 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 C19orf84I3L1E1 186 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 GATBO75879 557 aaKnown RBP8.71□□□□□ -1.02
CD44-207ENST00000425428 ARL6IP5O75915 188 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 RGS9O75916 674 aaPredicted RBP8.71□□□□□ -1.02
CD44-207ENST00000425428 ZFPL1O95159 310 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 NGFP01138 241 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 TTRP02766 147 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 CD36P16671 472 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 IGFBP2P18065 325 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 WNT5AP41221 380 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 PPP3R1P63098 170 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 NKPD1Q17RQ9 610 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 RSPO1Q2MKA7 263 aaPredicted RBP8.71□□□□□ -1.02
CD44-207ENST00000425428 Q499Y3 187 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 SPATA46Q5T0L3 261 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 ZBTB37Q5TC79 503 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 XAF1Q6GPH4 301 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 FBXW12Q6X9E4 464 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 C22orf34Q6ZV56 151 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 RFPL4BQ6ZWI9 263 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 MYPOPQ86VE0 399 aaPredicted RBP8.71□□□□□ -1.02
CD44-207ENST00000425428 ZNF101Q8IZC7 436 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 PRSS35Q8N3Z0 413 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 PAQR4Q8N4S7 273 aaPredicted RBP8.71□□□□□ -1.02
CD44-207ENST00000425428 ZNF485Q8NCK3 441 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 OR5D14Q8NGL3 314 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 KLF14Q8TD94 323 aaPredicted RBP8.71□□□□□ -1.02
CD44-207ENST00000425428 PHYHIPQ92561 330 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 FBXW5Q969U6 566 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 SGK3Q96BR1 496 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 CPNE2Q96FN4 548 aaPredicted RBP8.71□□□□□ -1.02
CD44-207ENST00000425428 OPALINQ96PE5 141 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 TECTBQ96PL2 329 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 DHRS9Q9BPW9 319 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 PDCD1LG2Q9BQ51 273 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 NDUFB11Q9NX14 153 aa8.71□□□□□ -1.02
CD44-207ENST00000425428 TRIM64CA6NLI5 447 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 SRSF10O75494 262 aaKnown RBP8.7□□□□□ -1.02
CD44-207ENST00000425428 ADRA2AP08913 450 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 SMIM18P0DKX4 95 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 GALP22466 123 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 TNFSF4P23510 183 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 MYL9P24844 172 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 SERPINF1P36955 418 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 GSK3AP49840 483 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 NANOS3P60323 173 aaKnown RBP8.7□□□□□ -1.02
CD44-207ENST00000425428 SNRPD2P62316 118 aaKnown RBP8.7□□□□□ -1.02
CD44-207ENST00000425428 ZNF92Q03936 586 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 SRSF1Q07955 248 aaKnown RBP eCLIP8.7□□□□□ -1.02
CD44-207ENST00000425428 GK2Q14410 553 aaPredicted RBP8.7□□□□□ -1.02
CD44-207ENST00000425428 AGAP6Q5VW22 663 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 MBNL2Q5VZF2 373 aaKnown RBP8.7□□□□□ -1.02
CD44-207ENST00000425428 GDPGP1Q6ZNW5 385 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 TMEM200AQ86VY9 491 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 SERPINA12Q8IW75 414 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 PHC2Q8IXK0 858 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 OR2AE1Q8NHA4 323 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 PP6455Q8WZ26 134 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 TMEM203Q969S6 136 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 SPSB4Q96A44 273 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 REPIN1Q9BWE0 567 aaKnown RBP8.7□□□□□ -1.02
CD44-207ENST00000425428 TCF7L1Q9HCS4 588 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 DYNLRB1Q9NP97 96 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 STUB1Q9UNE7 303 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 PIGLQ9Y2B2 252 aa8.7□□□□□ -1.02
CD44-207ENST00000425428 UBR5O95071 2799 aaPredicted RBP8.69□□□□□ -1.02
CD44-207ENST00000425428 ZNF816-ZNF321PA0A0X1KG74 233 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 B9A039 149 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 RAF1P04049 648 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 OR4A8P0C604 315 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 THBS4P35443 961 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 KIR3DL2P43630 455 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 EVX1P49640 407 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 HGFACQ04756 655 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 SPOCK1Q08629 439 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 CNN3Q15417 329 aaKnown RBP8.69□□□□□ -1.02
CD44-207ENST00000425428 ZNF672Q499Z4 452 aaPredicted RBP8.69□□□□□ -1.02
CD44-207ENST00000425428 ACSM3Q53FZ2 586 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 PRSS45Q7RTY3 260 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 CEACAM19Q7Z692 300 aa8.69□□□□□ -1.02
CD44-207ENST00000425428 KBTBD8Q8NFY9 601 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms