RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 OR13C3Q8NGS6 347 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 RGP1Q92546 391 aaPredicted RBP15.56■□□□□ 0.08
SDC1-203ENST00000403076 YIPF6Q96EC8 236 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 LYZL4Q96KX0 146 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 SOX7Q9BT81 388 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 TUBG2Q9NRH3 451 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 DHDHQ9UQ10 334 aa15.56■□□□□ 0.08
SDC1-203ENST00000403076 SF3B6Q9Y3B4 125 aaKnown RBP15.56■□□□□ 0.08
SDC1-203ENST00000403076 GGT3PA6NGU5 568 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 RGS9O75916 674 aaPredicted RBP15.55■□□□□ 0.08
SDC1-203ENST00000403076 OCM2P0CE71 109 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 GLRXP35754 106 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 FABP6P51161 128 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 PRSS12P56730 875 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 ACSM3Q53FZ2 586 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 GPR107Q5VW38 600 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 OR51A4Q8NGJ6 313 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 SPSB4Q96A44 273 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 CMBLQ96DG6 245 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 SPOCK3Q9BQ16 436 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 FUNDC2Q9BWH2 189 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 OPA3Q9H6K4 179 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 STUB1Q9UNE7 303 aa15.55■□□□□ 0.08
SDC1-203ENST00000403076 VSTM5A8MXK1 200 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 SIAH2O43255 324 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 CLDN1O95832 211 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 ZNF12P17014 697 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 GADD45AP24522 165 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 MAGEB1P43366 347 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 MAP2K3P46734 347 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 GSK3AP49840 483 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 NKX6-1P78426 367 aaPredicted RBP15.54■□□□□ 0.08
SDC1-203ENST00000403076 TIMM50Q3ZCQ8 353 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 Q499Y3 187 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 CLVS1Q8IUQ0 354 aaPredicted RBP15.54■□□□□ 0.08
SDC1-203ENST00000403076 CCDC54Q8NEL0 328 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 NUP37Q8NFH4 326 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 KBTBD8Q8NFY9 601 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 KLF14Q8TD94 323 aaPredicted RBP15.54■□□□□ 0.08
SDC1-203ENST00000403076 MARS2Q96GW9 593 aaKnown RBP15.54■□□□□ 0.08
SDC1-203ENST00000403076 CHCHD6Q9BRQ6 235 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 REPIN1Q9BWE0 567 aaKnown RBP15.54■□□□□ 0.08
SDC1-203ENST00000403076 OR51E2Q9H255 320 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 PLEKHA1Q9HB21 404 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 SSR3Q9UNL2 185 aa15.54■□□□□ 0.08
SDC1-203ENST00000403076 SPTAN1Q13813 2472 aaKnown RBP15.54■□□□□ 0.08
SDC1-203ENST00000403076 LOC100506127A0A0U1RQW1 187 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 SHISA9B4DS77 424 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 GABRPO00591 440 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 DHRS3O75911 302 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 IGLV3-1P01715 115 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 CD2P06729 351 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 ZNF20P17024 532 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 CCL1P22362 96 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 THBS4P35443 961 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 RPS11P62280 158 aaKnown RBP eCLIP15.53■□□□□ 0.08
SDC1-203ENST00000403076 FAM3AP98173 230 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 FABP5Q01469 135 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 SP5Q6BEB4 398 aaPredicted RBP15.53■□□□□ 0.08
SDC1-203ENST00000403076 FBXW12Q6X9E4 464 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 CEACAM19Q7Z692 300 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 SEMA6DQ8NFY4 1073 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 OR14A2Q96R54 314 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 FZR1Q9UM11 496 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 CMAHPQ9Y471 501 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 TRBV5-5A0A0J9YX44 114 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 hCG_38984A0A1B0GV85 526 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 A0A1W2PPK0 400 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 LOC390937A0A1W2PQ73 354 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 CCDC160A6NGH7 325 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 ZNF879B4DU55 563 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 AIREO43918 545 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 PLAUP00749 431 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 RAC2P15153 192 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 SELEP16581 610 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 MAPK3P27361 379 aaPredicted RBP15.53■□□□□ 0.08
SDC1-203ENST00000403076 MPV17P39210 176 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 SELENOVP59797 346 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 INSL4Q14641 139 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 DAZAP2Q15038 168 aaPredicted RBP15.53■□□□□ 0.08
SDC1-203ENST00000403076 OR2T2Q6IF00 324 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 PAMR1Q6UXH9 720 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 PLPP7Q8NBV4 271 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 OR14K1Q8NGZ2 314 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 SYNPRQ8TBG9 265 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 THRSPQ92748 146 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 TMEM106AQ96A25 262 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 FGGYQ96C11 551 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 HS3ST6Q96QI5 342 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 CA10Q9NS85 328 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 ZNF275Q9NSD4 429 aaPredicted RBP15.53■□□□□ 0.08
SDC1-203ENST00000403076 KCNN3Q9UGI6 736 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 DUSP13Q9UII6 198 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 PIGLQ9Y2B2 252 aa15.53■□□□□ 0.08
SDC1-203ENST00000403076 LRRK2Q5S007 2527 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 TRDV1A0A1B0GX56 115 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 A6NIN4 97 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 H3BSA7 217 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 LMX1BO60663 402 aa15.52■□□□□ 0.07
SDC1-203ENST00000403076 NOL3O60936 208 aaKnown RBP15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms