RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NAA40Q86UY6 237 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 OR1M1Q8NGA1 313 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 OR5T2Q8NGG2 359 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 C11orf40Q8WZ69 217 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 ARL11Q969Q4 196 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 RAB22AQ9UL26 194 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 ABCA7Q8IZY2 2146 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 TEX13DA0A0J9YY54 714 aaPredicted RBP18.61■□□□□ 0.57
CTCF-202ENST00000401394 SPTY2D1-AS1A0A0U1RR47 76 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 RAB19A4D1S5 217 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 DBX1A6NMT0 343 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 NPIPB7O75200 414 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.61■□□□□ 0.57
CTCF-202ENST00000401394 CCDC36Q8IYA8 594 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 CLCC1Q96S66 551 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 METTL8Q9H825 291 aaKnown RBP18.61■□□□□ 0.57
CTCF-202ENST00000401394 PCDHGA1Q9Y5H4 931 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 WDFY4Q6ZS81 3184 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 F8VVB4 439 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 F8VWA3 439 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 GUSBP08236 651 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 ACAA1P09110 424 aaPredicted RBP18.6■□□□□ 0.57
CTCF-202ENST00000401394 F2RL1P55085 397 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 DHRS7BQ6IAN0 325 aaPredicted RBP18.6■□□□□ 0.57
CTCF-202ENST00000401394 LCN10Q6JVE6 187 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 C7orf61Q8IZ16 206 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 RNF141Q8WVD5 230 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 NRIP2Q9BQI9 281 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 PBOV1Q9GZY1 135 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 LPAR5Q9H1C0 372 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 MYOZ1Q9NP98 299 aaPredicted RBP18.6■□□□□ 0.57
CTCF-202ENST00000401394 LINC00587B1AMM8 73 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 SFTA3P0C7M3 94 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 ZNF93P35789 620 aaPredicted RBP18.6■□□□□ 0.57
CTCF-202ENST00000401394 GABRA4P48169 554 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 SLC26A5P58743 744 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 CCDC157Q569K6 752 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 SLAMF6Q96DU3 332 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 BSCL2Q96G97 398 aaPredicted RBP18.6■□□□□ 0.57
CTCF-202ENST00000401394 NAA11Q9BSU3 229 aaPredicted RBP18.6■□□□□ 0.57
CTCF-202ENST00000401394 SLCO5A1Q9H2Y9 848 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 FAM206AQ9NX38 181 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 LOC390937A0A1W2PQ73 354 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 MED6O75586 246 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 CLDN6P56747 220 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 GPR85P60893 370 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 DCDP81605 110 aaKnown RBP18.6■□□□□ 0.57
CTCF-202ENST00000401394 DEFB133Q30KQ1 61 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 HOGA1Q86XE5 327 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 SPAG16Q8N0X2 631 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 SLC30A7Q8NEW0 376 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 LILRB1Q8NHL6 650 aaPredicted RBP18.6■□□□□ 0.57
CTCF-202ENST00000401394 SFT2D1Q8WV19 159 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 AKR1E2Q96JD6 320 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 PDE7BQ9NP56 450 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 ZNF581Q9P0T4 197 aa18.6■□□□□ 0.57
CTCF-202ENST00000401394 FHITP49789 147 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 MEOX2P50222 304 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 FBXW4P57775 412 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 PPP1R3BQ86XI6 285 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 LIN37Q96GY3 246 aaPredicted RBP18.59■□□□□ 0.57
CTCF-202ENST00000401394 SLC46A1Q96NT5 459 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 RSRP1Q9BUV0 290 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 TMEM100Q9NV29 134 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 SLC2A8Q9NY64 477 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 PIAS3Q9Y6X2 628 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 AHSA1O95433 338 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 DHPSP49366 369 aaPredicted RBP18.59■□□□□ 0.57
CTCF-202ENST00000401394 SPEM2Q0P670 501 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 HLA-DQA1Q5Y7H0 255 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 TERB2Q8NHR7 220 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 RTBDNQ9BSG5 229 aaPredicted RBP18.59■□□□□ 0.57
CTCF-202ENST00000401394 TPSD1Q9BZJ3 242 aa18.59■□□□□ 0.57
CTCF-202ENST00000401394 IGKV1D-8A0A087WSZ0 117 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 FRG2CA6NGY1 282 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 A8MVM7 634 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 NPIPA5E9PKD4 350 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 OR8U9P0C7N5 309 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 HLA-GP17693 338 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 PPT1P50897 306 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 BIDP55957 195 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 ABHD12BQ7Z5M8 362 aaPredicted RBP18.58■□□□□ 0.57
CTCF-202ENST00000401394 OR8U1Q8NH10 309 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 PHOSPHO2Q8TCD6 241 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 SECTM1Q8WVN6 248 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 RCC2Q9P258 522 aaKnown RBP18.58■□□□□ 0.57
CTCF-202ENST00000401394 NPIPA1Q9UND3 350 aa18.58■□□□□ 0.57
CTCF-202ENST00000401394 TMEM150CB9EJG8 249 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 MBTPS2O43462 519 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 MTRF1O75570 445 aaKnown RBP18.58■□□□□ 0.56
CTCF-202ENST00000401394 PGCP20142 388 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 UQCC3Q6UW78 93 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 ZDHHC22Q8N966 263 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 NAXEQ8NCW5 288 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 C14orf79Q96F83 325 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 C5orf34Q96MH7 638 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 FANCFQ9NPI8 374 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 ZFP57Q9NU63 452 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 LPAR3Q9UBY5 353 aa18.58■□□□□ 0.56
CTCF-202ENST00000401394 EDARQ9UNE0 448 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms