RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TATDN3Q17R31 274 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 SLC36A2Q495M3 483 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 ATAD3CQ5T2N8 411 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 ZNF474Q6S9Z5 364 aaPredicted RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 DCXRQ7Z4W1 244 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 CATSPERDQ86XM0 798 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 GABRG1Q8N1C3 465 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 DNAAF1Q8NEP3 725 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 C1orf162Q8NEQ5 155 aaPredicted RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 STEAP2Q8NFT2 490 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 UBASH3BQ8TF42 649 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 CREB3L1Q96BA8 519 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 SLC25A38Q96DW6 304 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 MARVELD1Q9BSK0 173 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 EMC6Q9BV81 110 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 MOV10Q9HCE1 1003 aaKnown RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 UPB1Q9UBR1 384 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 NDRG3Q9UGV2 375 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 GTF2A1LQ9UNN4 478 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 SLC22A13Q9Y226 551 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 ETV7Q9Y603 341 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 GSTZ1O43708 216 aaPredicted RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 ORC5O43913 435 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 IGHG1P01857 330 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 MAS1P04201 325 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 CD3GP09693 182 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 HOXB1P14653 301 aaPredicted RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 IGFBP2P18065 325 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 HLA-DMAP28067 261 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 MPGP29372 298 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 SRP9P49458 86 aaKnown RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 CLDN17P56750 224 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 TBRG1Q3YBR2 411 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 KRT74Q7RTS7 529 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 LUZP2Q86TE4 346 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 LINC00346Q8IVM7 164 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 GLB1L2Q8IW92 636 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 IZUMO1Q8IYV9 350 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 TMEM123Q8N131 208 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 TOMM5Q8N4H5 51 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 ST7LQ8TDW4 575 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 RBP7Q96R05 134 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 OR2M2Q96R28 347 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 MRPL13Q9BYD1 178 aaKnown RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 C12orf49Q9H741 205 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 OR5V1Q9UGF6 321 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 PAIP2BQ9ULR5 123 aaKnown RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 R4GMQ9 66 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 FLNCQ14315 2725 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 DOPEY1Q5JWR5 2465 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 NCOA6Q14686 2063 aaPredicted RBP8.91□□□□□ -0.98
VPS53-202ENST00000389040 FAM90A27PA6NNH2 459 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 CENPXA8MT69 81 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 SRSF10O75494 262 aaKnown RBP8.91□□□□□ -0.98
VPS53-202ENST00000389040 KRT33AO76009 404 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 COX5AP20674 150 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 CFPP27918 469 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 NTF4P34130 210 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 CLRN1P58418 232 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 KCNJ8Q15842 424 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 NRN1LQ496H8 165 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 PLA1AQ53H76 456 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 RNASE12Q5GAN4 147 aaKnown RBP8.91□□□□□ -0.98
VPS53-202ENST00000389040 THEM4Q5T1C6 240 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 SFRP5Q5T4F7 317 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 DEGS2Q6QHC5 323 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 CCDC36Q8IYA8 594 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 C20orf196Q8IYI0 205 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 GPR137CQ8N3F9 429 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 C17orf78Q8N4C9 275 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 NOXO1Q8NFA2 376 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 SYNPRQ8TBG9 265 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 SMIM4Q8WVI0 70 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 SLC7A6Q92536 515 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 S100A16Q96FQ6 103 aaKnown RBP8.91□□□□□ -0.98
VPS53-202ENST00000389040 ST6GAL2Q96JF0 529 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 OPN3Q9H1Y3 402 aaPredicted RBP8.91□□□□□ -0.98
VPS53-202ENST00000389040 DHDHQ9UQ10 334 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 ALG5Q9Y673 324 aa8.91□□□□□ -0.98
VPS53-202ENST00000389040 A8MV72 311 aaPredicted RBP8.9□□□□□ -0.98
VPS53-202ENST00000389040 ZNF587BE7ETH6 402 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 INMT-MINDY4F8WBC2 141 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 PGA4P0DJD7 388 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 PGA3P0DJD8 388 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 BTCP35070 178 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 NKX2-5P52952 324 aaPredicted RBP8.9□□□□□ -0.98
VPS53-202ENST00000389040 ART1P52961 327 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 SCAND1P57086 179 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 CAMK2DQ13557 499 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 CDSNQ15517 529 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 HIST3H3Q16695 136 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 TSPO2Q5TGU0 170 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 ZNF627Q7L945 461 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 LINGO2Q7L985 606 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 PRSS45Q7RTY3 260 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 OR10H5Q8NGA6 315 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 RNF133Q8WVZ7 376 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 RAB40AQ8WXH6 277 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 C11orf40Q8WZ69 217 aa8.9□□□□□ -0.98
VPS53-202ENST00000389040 PPP1R14AQ96A00 147 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms