RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 ACSF3Q4G176 576 aaPredicted RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 SLC35D3Q5M8T2 416 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 THEM4Q5T1C6 240 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RNLSQ5VYX0 342 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CHMP1BQ7LBR1 199 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 SSX6Q7RTT6 188 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 LHFPL3Q86UP9 236 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 DTX2Q86UW9 622 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 TIGD4Q8IY51 512 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 STX19Q8N4C7 294 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RPRMLQ8N4K4 120 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RFLNBQ8N5W9 214 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 NANOGP1Q8N7R0 232 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ZNF485Q8NCK3 441 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 NOXO1Q8NFA2 376 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 PROKR2Q8NFJ6 384 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 OR6K6Q8NGW6 343 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 FAM57AQ8TBR7 257 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 NSMAFQ92636 917 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CORO2AQ92828 525 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MCHR2Q969V1 340 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 TMEM45BQ96B21 275 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 FYTTD1Q96QD9 318 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 RBP7Q96R05 134 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 TBX5Q99593 518 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 PRRG4Q9BZD6 226 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 WDR76Q9H967 626 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 RNF122Q9H9V4 155 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CALHM2Q9HA72 323 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CCNB1IP1Q9NPC3 277 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ACOT13Q9NPJ3 140 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 COPS3Q9UNS2 423 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 MOKQ9UQ07 419 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 KLHDC2Q9Y2U9 406 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 LSM2Q9Y333 95 aaKnown RBP3.1□□□□□ -1.91
MCF2-202ENST00000370573 UGT2A1Q9Y4X1 527 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 PCDHGB1Q9Y5G3 927 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 FAM215AQ9Y5M1 114 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 DOCK7Q96N67 2140 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CACNA1CQ13936 2221 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 CACNA1BQ00975 2339 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 ZFYVE26Q68DK2 2539 aa3.1□□□□□ -1.91
MCF2-202ENST00000370573 SMIM31A0A1B0GVY4 71 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 A0A1W2PQL4 384 aaPredicted RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 DPPA5A6NC42 116 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 SNTNA6NMZ2 147 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 C12orf71A8MTZ7 269 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 CENPBD1B2RD01 187 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 ZNF593O00488 134 aaPredicted RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 GPR171O14626 319 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 TOXO94900 526 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 RAB36O95755 333 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 FADS2O95864 444 aaKnown RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 IGHV3-9P01782 118 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 HEXAP06865 529 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 DCKP27707 260 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 CRABP1P29762 137 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 RPS27P42677 84 aaKnown RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 RPL5P46777 297 aaKnown RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 CENPAP49450 140 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 FOXF2Q12947 444 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 C10orf128Q5T292 105 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 SERTAD4-AS1Q5TG53 156 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 TSPO2Q5TGU0 170 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 OR2G6Q5TZ20 316 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 UBE2UQ5VVX9 321 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 CST9LP1Q5W188 147 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 NSUN5P2Q63ZY6 315 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 C3P1Q6ZMU1 363 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 FOXL2NBQ6ZUU3 175 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 SLC16A9Q7RTY1 509 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 DOLPP1Q86YN1 238 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 ERI1Q8IV48 349 aaKnown RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 SLC35F2Q8IXU6 374 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 SLC26A10Q8NG04 563 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 OR6N1Q8NGY5 312 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 C11orf40Q8WZ69 217 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 OR5M11Q96RB7 305 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 AMELYQ99218 206 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 CNN2Q99439 309 aaKnown RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 MLST8Q9BVC4 326 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 RACGAP1Q9H0H5 632 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 ISG20L2Q9H9L3 353 aaKnown RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 RANGRFQ9HD47 186 aaPredicted RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 SLC7A10Q9NS82 523 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 KLHL9Q9P2J3 617 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 MGAT4CQ9UBM8 478 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 ZNF835Q9Y2P0 537 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 NOSIPQ9Y314 301 aaKnown RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 NCOA6Q14686 2063 aaPredicted RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 SHANK1Q9Y566 2161 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 RTTNQ86VV8 2226 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 NBASA2RRP1 2371 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 CD8B2A6NJW9 211 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 NPIPB11E5RHQ5 1161 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 PRYO14603 147 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 SS18L1O75177 396 aaPredicted RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 MRPL33O75394 65 aaKnown RBP3.09□□□□□ -1.91
MCF2-202ENST00000370573 LALBAP00709 142 aa3.09□□□□□ -1.91
MCF2-202ENST00000370573 ALOX5APP20292 161 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms