RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ARG2P78540 354 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 LGALSLQ3ZCW2 172 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 H2BFWTQ7Z2G1 175 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 CBLN2Q8IUK8 224 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 RBMXL3Q8N7X1 1067 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 TPPP3Q9BW30 176 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 NUDT9Q9BW91 350 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 S1PR5Q9H228 398 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 SHROOM3Q8TF72 1996 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 IGHV3-20A0A0C4DH32 117 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 OR5K3A6NET4 321 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 PRAMEF25A6NGN4 478 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 H3BP45 60 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 OR8U8P0C7N1 319 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 MPGP29372 298 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 ANKRD16Q6P6B7 361 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 INTS12Q96CB8 462 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 NXF2Q9GZY0 626 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 HYAL3O43820 417 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 HPXP02790 462 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 ENPP1P22413 925 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 PPICP45877 212 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 ETFBKMTQ8IXQ9 262 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 ZC3HAV1LQ96H79 300 aaKnown RBP17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 TMEM218A2RU14 115 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 TLCD2A6NGC4 264 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF814B7Z6K7 855 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 M0R135 149 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 RUNX2Q13950 521 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 ZDHHC22Q8N966 263 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF799Q96GE5 643 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 NTMQ9P121 344 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 BOKQ9UMX3 212 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 WSB1Q9Y6I7 421 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 IAPPP10997 89 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 BTG2P78543 158 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF66Q6ZN08 573 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 LANCL3Q6ZV70 420 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 OR11H7Q8NGC8 314 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 SLC25A43Q8WUT9 341 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 PATE1Q8WXA2 126 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 TMEM37Q8WXS4 190 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 OR8B4Q96RC9 309 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 TTC3P53804 2025 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 ACTR3CQ9C0K3 210 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 LAT2Q9GZY6 243 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 ZDHHC11Q9H8X9 412 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 EXOGQ9Y2C4 368 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 KCNE1BA0A087WTH5 132 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 DEGS1O15121 323 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 SULT1A3P0DMM9 295 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 SULT1A4P0DMN0 295 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 HNF1AP20823 631 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 CD96P40200 585 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 CD300LDQ6UXZ3 194 aa17.64■□□□□ 0.41
CCDC88B-202ENST00000356786 MRPL58Q14197 206 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 CATSPERDQ86XM0 798 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 ARHGEF39Q8N4T4 335 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 TTC9Q92623 222 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 RDH5Q92781 318 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 CALHM2Q9HA72 323 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 A0A0A6YYD5 115 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 INHBBP09529 407 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 GABRA4P48169 554 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 PMP22Q01453 160 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 SP6Q3SY56 376 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 RNF165Q6ZSG1 346 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 OR10P1Q8NGE3 313 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 SUMO1P63165 101 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 PLAC9Q5JTB6 97 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 OR13H1Q8NG92 308 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 CCDC74AQ96AQ1 378 aa17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF230Q9UIE0 474 aaPredicted RBP17.63■□□□□ 0.41
CCDC88B-202ENST00000356786 IDSB3KWA1 339 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 PCBP3P57721 371 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF574Q6ZN55 896 aaPredicted RBP17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF687Q8N1G0 1237 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 OR6S1Q8NH40 331 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 OTOSQ8NHW6 89 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 CTDSP1Q9GZU7 261 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 HIF1ANQ9NWT6 349 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 MTCH1Q9NZJ7 389 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 CCDC187A0A096LP49 1063 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 A0A1W2PNR3 127 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF98A6NK75 572 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 H0Y8X5 98 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 SSR4P51571 173 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 RAB32Q13637 225 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 THEM4Q5T1C6 240 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 SLC35G3Q8N808 338 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 OR2AE1Q8NHA4 323 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 RSRP1Q9BUV0 290 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 ANKRD20A5PA0PJZ0 165 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 ZNF732B4DXR9 585 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 PRRT4C9JH25 899 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 YKT6O15498 198 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 DCDP81605 110 aaKnown RBP17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 MOGAT2Q3SYC2 334 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 TIGITQ495A1 244 aa17.62■□□□□ 0.41
CCDC88B-202ENST00000356786 COL13A1Q5TAT6 717 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms