RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RASD1Q9Y272 281 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TMED7Q9Y3B3 224 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MED31Q9Y3C7 131 aa2□□□□□ -2.09
VPS54-202ENST00000354504 PEX16Q9Y5Y5 336 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FKBP7Q9Y680 259 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ROS1P08922 2347 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ZNF407Q9C0G0 2248 aa2□□□□□ -2.09
VPS54-202ENST00000354504 IGKV1D-8A0A087WSZ0 117 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 A0A0J9YW62 118 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 A8MVM7 634 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 RPL36A-HNRNPH2H7BZ11 118 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OR2J2O76002 312 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 RCBTB2O95199 551 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CSTAP01040 98 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 HPNP05981 417 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CTSEP14091 401 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CELP19835 753 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CDH3P22223 829 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CFL1P23528 166 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 ACKR3P25106 362 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 GRPRP30550 384 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SLC6A8P48029 635 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 GDI2P50395 445 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 FOXG1P55316 489 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 H2BFSP57053 126 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SUPT4H1P63272 117 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 HSF2Q03933 536 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TRA2AQ13595 282 aaKnown RBP eCLIP1.99□□□□□ -2.09
VPS54-202ENST00000354504 ALKBH1Q13686 389 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 RGS21Q2M5E4 152 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SLC22A6Q4U2R8 563 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ELFN2Q5R3F8 820 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 FAM69AQ5T7M9 428 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 C1orf189Q5VU69 101 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 AADACL3Q5VUY0 350 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TIGD3Q6B0B8 471 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ZNF774Q6NX45 483 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ANKRD16Q6P6B7 361 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PLXDC2Q6UX71 529 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CREB3L2Q70SY1 520 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PEG10Q86TG7 708 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 LRRC28Q86X40 367 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 ZNF440Q8IYI8 595 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TAGAPQ8N103 731 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 STX19Q8N4C7 294 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 RAB42Q8N4Z0 105 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 DNAAF1Q8NEP3 725 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OR1J2Q8NGS2 313 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OR2Y1Q8NGV0 311 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 MBD3L2Q8NHZ7 208 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 NEIL3Q8TAT5 605 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TEX47Q8TBZ9 253 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PHYHIPQ92561 330 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PTX4Q96A99 478 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 OTULINQ96BN8 352 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 HAVCR1Q96D42 359 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ERMAPQ96PL5 475 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 CNN2Q99439 309 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 NUDT16L1Q9BRJ7 211 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 PELOQ9BRX2 385 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 ABHD6Q9BV23 337 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 WDR13Q9H1Z4 485 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SYT4Q9H2B2 425 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 HMG20AQ9NP66 347 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 RPRD1BQ9NQG5 326 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 SERINC1Q9NRX5 453 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CAMK2AQ9UQM7 478 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SLC22A13Q9Y226 551 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CSAG2Q9Y5P2 127 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ALG5Q9Y673 324 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CACNA1AO00555 2505 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 IGKV1-12A0A0C4DH73 117 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 LOC100506127A0A0U1RQW1 187 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 LINC00473A8K010 186 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CENPBD1B2RD01 187 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 FAM157AC9JC47 383 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 NPIPA2E9PIF3 369 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 H3BN98 237 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 PSMD9O00233 223 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ZNF593O00488 134 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 PRYO14603 147 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 GPR171O14626 319 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 DUX1O43812 170 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 GMFGO60234 142 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 GATBO75879 557 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 KDM4BO94953 1096 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 IGKV1D-12P01611 117 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 HMGN1P05114 100 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ACSM4P0C7M7 580 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 SAGP10523 405 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 HLA-GP17693 338 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 CALCRP30988 508 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 TLX1P31314 330 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 NR4A2P43354 598 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 ARHGDIAP52565 204 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 NKX2-5P52952 324 aaPredicted RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 RAG2P55895 527 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 RPS18P62269 152 aaKnown RBP1.99□□□□□ -2.09
VPS54-202ENST00000354504 PPP3R1P63098 170 aa1.99□□□□□ -2.09
VPS54-202ENST00000354504 EIF3IQ13347 325 aaKnown RBP1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms