RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CEACAM19Q7Z692 300 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 SPERTQ8NA61 448 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 TRMT61AQ96FX7 289 aaKnown RBP7.98□□□□□ -1.13
USP4-202ENST00000351842 MSL2Q9HCI7 577 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 GP6Q9HCN6 339 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 NPDC1Q9NQX5 325 aaPredicted RBP7.98□□□□□ -1.13
USP4-202ENST00000351842 CAB39Q9Y376 341 aaPredicted RBP7.98□□□□□ -1.13
USP4-202ENST00000351842 MYO9AB2RTY4 2548 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 MTORP42345 2549 aa7.98□□□□□ -1.13
USP4-202ENST00000351842 IGHV1-18A0A0C4DH31 117 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 LOC107986453A0A1B0GWG9 222 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 IRGMA1A4Y4 181 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 UBL3O95164 117 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 CRHP06850 196 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 RGS6P49758 472 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 GGTLC2Q14390 218 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 RAB35Q15286 201 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 TBCEQ15813 527 aaPredicted RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 SSX1Q16384 188 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 RSPO1Q2MKA7 263 aaPredicted RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 STEAP2Q8NFT2 490 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 OR6Q1Q8NGQ2 317 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 OR13C3Q8NGS6 347 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 ZNF649Q9BS31 505 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 COMMD4Q9H0A8 199 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 HDHD2Q9H0R4 259 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 POFUT1Q9H488 388 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 PNRC2Q9NPJ4 139 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 ZANQ9Y493 2812 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 CELSR1Q9NYQ6 3014 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 KIAA2026Q5HYC2 2103 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 FBN2P35556 2912 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 GGT3PA6NGU5 568 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 SYNGR3O43761 229 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 AIREO43918 545 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 HRGP04196 525 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 SERPINA5P05154 406 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 PSMB1P20618 241 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 COX5AP20674 150 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 PRKACBP22694 351 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 CALCRP30988 508 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 ARR3P36575 388 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 KIR3DL2P43630 455 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 ZNF92Q03936 586 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 RGS21Q2M5E4 152 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 MEX3BQ6ZN04 569 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 MRPL21Q7Z2W9 205 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 PHC2Q8IXK0 858 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 ZNF454Q8N9F8 522 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 OR10AD1Q8NGE0 317 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 OR13C9Q8NGT0 318 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 ASB5Q8WWX0 329 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 PIGCQ92535 297 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 NRGNQ92686 78 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 TMEM106AQ96A25 262 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 FGGYQ96C11 551 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 C4orf45Q96LM5 186 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 CDCA4Q9BXL8 241 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 ELL3Q9HB65 397 aaPredicted RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 APCP25054 2843 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 A0A1B0GVI7 797 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 J3QRE1 110 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 LILRA1O75019 489 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 PIPP12273 146 aaPredicted RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 WNT5AP41221 380 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 KIR2DL3P43628 341 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 SNU13P55769 128 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 ALKBH1Q13686 389 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 CDONQ4KMG0 1287 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 PGAP1Q75T13 922 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 LRP11Q86VZ4 500 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 KBTBD8Q8NFY9 601 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 GIMAP1Q8WWP7 306 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 FCGR1BQ92637 280 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 REEP6Q96HR9 211 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 HS3ST6Q96QI5 342 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 SNX18Q96RF0 628 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 PAPOLGQ9BWT3 736 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 SLIRPQ9GZT3 109 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 HMG20AQ9NP66 347 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 EIF3KQ9UBQ5 218 aaKnown RBP7.97□□□□□ -1.13
USP4-202ENST00000351842 SLC25A15Q9Y619 301 aa7.97□□□□□ -1.13
USP4-202ENST00000351842 LOC105371267A0A1B0GV96 52 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 RPL36A-HNRNPH2H7BZ11 118 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 J3QKU1 62 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 CCRL2O00421 344 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 THBDP07204 575 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 PSMA1P25786 263 aaKnown RBP7.96□□□□□ -1.13
USP4-202ENST00000351842 FABP5Q01469 135 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 CDK5R1Q15078 307 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 P2RY8Q86VZ1 359 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 SLC25A40Q8TBP6 338 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 CHAC2Q8WUX2 184 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 ASB17Q8WXJ9 295 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 RNASE6Q93091 150 aaKnown RBP7.96□□□□□ -1.13
USP4-202ENST00000351842 PIGTQ969N2 578 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 LRRC46Q96FV0 321 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 MRPL48Q96GC5 212 aaKnown RBP7.96□□□□□ -1.13
USP4-202ENST00000351842 KCNJ15Q99712 375 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms