RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SRRQ9GZT4 340 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 ZNF354AO60765 605 aaPredicted RBP11.43□□□□□ -0.58
SDC3-201ENST00000336798 LALBAP00709 142 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 IGHV3-13P01766 116 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 IGHV3-7P01780 117 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 MRGPRX1Q96LB2 322 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 NUDT19A8MXV4 375 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 XRCC2O43543 280 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 AQP8O94778 261 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 RNF224P0DH78 156 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 CD80P33681 288 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 RFX2P48378 723 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 ZNF121P58317 390 aaPredicted RBP11.43□□□□□ -0.58
SDC3-201ENST00000336798 BPIFB3P59826 476 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 SPEM2Q0P670 501 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 SPINK9Q5DT21 86 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 AGBL4Q5VU57 503 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 ACTR3CQ9C0K3 210 aaPredicted RBP11.43□□□□□ -0.58
SDC3-201ENST00000336798 STRAPQ9Y3F4 350 aaKnown RBP11.43□□□□□ -0.58
SDC3-201ENST00000336798 KLK4Q9Y5K2 254 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 H7BYZ3 331 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 PGFP49763 221 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 ACOT6Q3I5F7 207 aaPredicted RBP11.43□□□□□ -0.58
SDC3-201ENST00000336798 ZNF787Q6DD87 383 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 PRSS42Q7Z5A4 293 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 UBE2L5PA0A1B0GUS4 154 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 LY86O95711 162 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 NID1P14543 1247 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 FABP9Q0Z7S8 132 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 PCK2Q16822 640 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 TMEM240Q5SV17 173 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 ACSM6Q6P461 480 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 MARCH1Q8TCQ1 289 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 FBXL4Q9UKA2 621 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 C19orf53Q9UNZ5 99 aaPredicted RBP11.43□□□□□ -0.58
SDC3-201ENST00000336798 ST3GAL6Q9Y274 331 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 G3V3Q6 166 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 SMIM18P0DKX4 95 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 AKAP12Q02952 1782 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 SELENBP1Q13228 472 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 OXA1LQ15070 435 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 CDH26Q8IXH8 852 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 MFSD4AQ8N468 514 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 RELL2Q8NC24 303 aaPredicted RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 NPEPL1Q8NDH3 523 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 BAHD1Q8TBE0 780 aaPredicted RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 OXGR1Q96P68 337 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 PLEKHB1Q9UF11 243 aaPredicted RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 OR2A25A4D2G3 310 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 PPIHO43447 177 aaKnown RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 AKR7A2O43488 359 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 ADRA2CP18825 462 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 ISG20L2Q9H9L3 353 aaKnown RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 ZNF71Q9NQZ8 489 aaPredicted RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 LIN7CQ9NUP9 197 aaKnown RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 F5H697 171 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 DSCR3O14972 297 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 SPINK4O60575 86 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 CHRM2P08172 466 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 NQO2P16083 231 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 PIGPP57054 158 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 FOXF1Q12946 379 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 GAMTQ14353 236 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 FAM209BQ5JX69 171 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 LHX4Q969G2 390 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 CMTM3Q96MX0 182 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 SLC25A21Q9BQT8 299 aaPredicted RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 TMPRSS5Q9H3S3 457 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 TREM2Q9NZC2 230 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 SCGB1C2P0DMR2 95 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 KRTDAPP60985 99 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 SUMO1P63165 101 aaKnown RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 LSRQ86X29 649 aaPredicted RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 FUNDC1Q8IVP5 155 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 C17orf78Q8N4C9 275 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 OR52B4Q8NGK2 314 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 GAR1Q9NY12 217 aaKnown RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 A0A0A6YYJ9 748 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.42□□□□□ -0.58
SDC3-201ENST00000336798 AKR1C3P42330 323 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 AGERQ15109 404 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 FBXL14Q8N1E6 418 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 GALNT16Q8N428 558 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 OR4D10Q8NGI6 311 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 ACER3Q9NUN7 267 aa11.42□□□□□ -0.58
SDC3-201ENST00000336798 TMEM200CA6NKL6 621 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 TIGITQ495A1 244 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 WIPI1Q5MNZ9 446 aaPredicted RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 DHRS7BQ6IAN0 325 aaPredicted RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 SPNS3Q6ZMD2 512 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 OR13F1Q8NGS4 319 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 M1APQ8TC57 530 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 SYT11Q9BT88 431 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 LAT2Q9GZY6 243 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 SLC25A32Q9H2D1 315 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 DLL4Q9NR61 685 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 SLCO1C1Q9NYB5 712 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 A4GNTQ9UNA3 340 aa11.41□□□□□ -0.58
SDC3-201ENST00000336798 RCL1Q9Y2P8 373 aaKnown RBP11.41□□□□□ -0.58
SDC3-201ENST00000336798 CHD4Q14839 1912 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms