RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PAN3Q58A45 887 aaKnown RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 EXOSC6Q5RKV6 272 aaKnown RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 PLXDC2Q6UX71 529 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 APOOLQ6UXV4 268 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 NAXEQ8NCW5 288 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 BEST4Q8NFU0 473 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 CGGBP1Q9UFW8 167 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SLC22A13Q9Y226 551 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 IGLV3-32A0A0A0MS00 114 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 M0R233 179 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 OIP5O43482 229 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 HLA-HP01893 362 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 EPXP11678 715 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 TMEM11P17152 192 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 P2RY14Q15391 338 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 NRN1LQ496H8 165 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 NLRC3Q7RTR2 1065 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 TMPRSS7Q7RTY8 843 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 TIPARPQ7Z3E1 657 aaKnown RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 NFAM1Q8NET5 270 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SLC6A7Q99884 636 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 MFRPQ9BY79 579 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 CYSLTR2Q9NS75 346 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 A0A1W2PPH5 198 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 NKX2-8O15522 239 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 CNOT4O95628 575 aaKnown RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 POU4F3Q15319 338 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SMIM21Q3B7S5 101 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 PABPC1L2AQ5JQF8 200 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 GCNT2Q8N0V5 402 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 PARP16Q8N5Y8 322 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 TSPAN32Q96QS1 320 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 DOK1Q99704 481 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 LRFN3Q9BTN0 628 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SAV1Q9H4B6 383 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 LOC102724200A0A096LPH7 203 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 KANTRA0A1W2PQU2 76 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 DHRS7CA6NNS2 312 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 NPIPB7O75200 414 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SLC22A5O76082 557 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 COX5BP10606 129 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 RAG2P55895 527 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 BTG1P62324 171 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 IKZF1Q13422 519 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 PEAR1Q5VY43 1037 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SFRP4Q6FHJ7 346 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 HAGHLQ6PII5 290 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 STAC2Q6ZMT1 411 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 OR4M1Q8NGD0 313 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 OR4K15Q8NH41 348 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 RND1Q92730 232 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 MCHR2Q969V1 340 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 PHB2Q99623 299 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 MS4A5Q9H3V2 200 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 C12orf49Q9H741 205 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SLCO1C1Q9NYB5 712 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 FOXD3Q9UJU5 478 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 MRPS18CQ9Y3D5 142 aaKnown RBP6.11□□□□□ -1.43
SF3B1-201ENST00000335508 VWA8A3KMH1 1905 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 NOTCH4Q99466 2003 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 ACANP16112 2415 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 SPINT2O43291 252 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 PAHP00439 452 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 FUT3P21217 361 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 BMP5P22003 454 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 PCSK6P29122 969 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 CHRNB4P30926 498 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 FABP6P51161 128 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 STEAP1BQ6NZ63 245 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 NDNFQ8TB73 568 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 AICDAQ9GZX7 198 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 IL19Q9UHD0 177 aa6.11□□□□□ -1.43
SF3B1-201ENST00000335508 OGG1O15527 345 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TIAF1O95411 115 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 FMODQ06828 376 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 SPINK14Q6IE38 97 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 CORO6Q6QEF8 472 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 DGAT2L6Q6ZPD8 337 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 SLC25A26Q70HW3 274 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 OR2W3Q7Z3T1 314 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 OR5D18Q8NGL1 313 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TBC1D24Q9ULP9 559 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 PIGLQ9Y2B2 252 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 ZNF732B4DXR9 585 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 RER1O15258 196 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 IGKV1D-16P01601 117 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TNFSF10P50591 281 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 CTF1Q16619 201 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 C22orf15Q8WYQ4 148 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 ENY2Q9NPA8 101 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 PRELID3BQ9Y3B1 194 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 LRP12Q9Y561 859 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TMIGD3P0DMS9 266 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-201ENST00000335508 SERPINA2P20848 420 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 CLDN12P56749 244 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TMPRSS3P57727 454 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 GSG1LQ6UXU4 331 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 TFAP2EQ6VUC0 442 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 OR8H1Q8NGG4 311 aa6.1□□□□□ -1.43
SF3B1-201ENST00000335508 OR51F2Q8NH61 342 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms