RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 C6orf52Q5T4I8 152 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 ZNF786Q8N393 782 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 OR10AD1Q8NGE0 317 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 OR56B2PQ8NGI1 322 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 OR13G1Q8NGZ3 307 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 RDH5Q92781 318 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 PIMREGQ9BSJ6 248 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 TMUB1Q9BVT8 246 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 EGLN1Q9GZT9 426 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 PBOV1Q9GZY1 135 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 PCDHGB1Q9Y5G3 927 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 METTL15A6NJ78 407 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 ACOD1A6NK06 481 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 RNF223E7ERA6 249 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 LOC110117498-PIK3R3F6TDL0 507 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 H0YJX3 145 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 SMAD7O15105 426 aaKnown RBP13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 CDC14BO60729 498 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 CFL1P23528 166 aaKnown RBP13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 COL8A2P25067 703 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 FAM3AP98173 230 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 RAB40BQ12829 278 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 TP53I3Q53FA7 332 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 FAM220AQ7Z4H9 259 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 CIARTQ8N365 385 aaPredicted RBP13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 ACBD7Q8N6N7 88 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 TFAP2CQ92754 450 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 SLC30A2Q9BRI3 323 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 RGCCQ9H4X1 137 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 TMEM100Q9NV29 134 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 GNG8Q9UK08 70 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 R4GMQ9 66 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 HSPE1-MOB4S4R3N1 261 aa13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 ZNF469Q96JG9 3925 aaPredicted RBP13.5□□□□□ -0.25
CCDC28A-201ENST00000332797 hCG_38984A0A1B0GV85 526 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 H0YL77 283 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 NDUFS8O00217 210 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 MLNRO43193 412 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 SRSF10O75494 262 aaKnown RBP13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 SULT1C4O75897 302 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 FADS2O95864 444 aaKnown RBP13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 PNPP00491 289 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 CD55P08174 381 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 SLC25A16P16260 332 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 GSK3AP49840 483 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 MMP16P51512 607 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 KLHL22Q53GT1 634 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 SPRNQ5BIV9 151 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 ZNF684Q5T5D7 378 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 BCL2L15Q5TBC7 163 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 COMMD2Q86X83 199 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 OR52I1Q8NGK6 324 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 YIPF5Q969M3 257 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 SIGLEC11Q96RL6 698 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 REG4Q9BYZ8 158 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 MOB1AQ9H8S9 216 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 ACOXLQ9NUZ1 547 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 NUFIP1Q9UHK0 495 aaKnown RBP13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 MYRFQ9Y2G1 1151 aa13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 CHD3Q12873 2000 aaKnown RBP13.49□□□□□ -0.25
CCDC28A-201ENST00000332797 IGHV1-69-2A0A0G2JMI3 117 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 HLA-DPB1P04440 258 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 ACHEP22303 614 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 CA6P23280 308 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 CRYBB2P43320 205 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 MRPS11P82912 194 aaKnown RBP13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 LIPNQ5VXI9 398 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 IZUMO2Q6UXV1 221 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 LHFPL3Q86UP9 236 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 MAPK1IP1LQ8NDC0 245 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 ITLN1Q8WWA0 313 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 PPP1R14AQ96A00 147 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 LYZL4Q96KX0 146 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 OR2V2Q96R30 315 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 CHODLQ9H9P2 273 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 DLL4Q9NR61 685 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 MRPS18AQ9NVS2 196 aaKnown RBP13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 TREM2Q9NZC2 230 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 MRPL15Q9P015 296 aaKnown RBP13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 ZNF391Q9UJN7 358 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 OR52A1Q9UKL2 312 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 SNX5Q9Y5X3 404 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 A0A0U1RQV5 110 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 F5H5P2 479 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 FAM20BO75063 409 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 IGHA1P01876 353 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 DDOSTP39656 456 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 OR8G1Q15617 311 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 CDONQ4KMG0 1287 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 THAP5Q7Z6K1 395 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 OR51E1Q8TCB6 317 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 DVL3Q92997 716 aaPredicted RBP13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 MRPL48Q96GC5 212 aaKnown RBP13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 C18orf12Q96KH6 178 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 COX4I2Q96KJ9 171 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 SOX7Q9BT81 388 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 ADAT1Q9BUB4 502 aaKnown RBP13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 ALG8Q9BVK2 526 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 BPESC1Q9GZL8 116 aa13.48□□□□□ -0.25
CCDC28A-201ENST00000332797 RASSF4Q9H2L5 321 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms