RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MPZL3Q6UWV2 235 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 SFTPA2Q8IWL1 248 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 SFTPA1Q8IWL2 248 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 GPR148Q8TDV2 347 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM40Q8WWA1 233 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 MISP3Q96FF7 219 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 GMPR2Q9P2T1 348 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 SLCO3A1Q9UIG8 710 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 FITM1A5D6W6 292 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 PSMB11A5LHX3 300 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 H3BML4 177 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 POP7O75817 140 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC2A10O95528 541 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 CD5P06127 495 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 ZP3P21754 424 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 ID1P41134 155 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 RBM3P98179 157 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 PARP15Q460N3 678 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 OR10J3Q5JRS4 329 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC25A34Q6PIV7 304 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 OR2W3Q7Z3T1 314 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 OLIG1Q8TAK6 271 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF417Q8TAU3 575 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 BRK1Q8WUW1 75 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 HRASLS5Q96KN8 279 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC6A18Q96N87 628 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 GGTLC1Q9BX51 225 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 ACPTQ9BZG2 426 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 MAGT1Q9H0U3 335 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 KLK15Q9H2R5 256 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 CST9LQ9H4G1 147 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 OR5AC2Q9NZP5 309 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 FRMPD1Q5SYB0 1578 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 APOMO95445 188 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 CRYBA1P05813 215 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 OSMP13725 252 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 TEAD1P28347 426 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 PJVKQ0ZLH3 352 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC10A6Q3KNW5 377 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 LSRQ86X29 649 aaPredicted RBP6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 WFDC3Q8IUB2 231 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 ADAT1Q9BUB4 502 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM70Q9BUB7 260 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC35B3Q9H1N7 401 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 MEGF11A6BM72 1044 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 CLDN24A6NM45 220 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 ENTPD3O75355 529 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 GAGE7O76087 117 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 OAS1P00973 400 aaKnown RBP6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 C1QTNF9P0C862 333 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 GAGE12FP0CL80 117 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 GAGE12GP0CL81 117 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 GAGE12IP0CL82 117 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 DDOSTP39656 456 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 DEGS2Q6QHC5 323 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 CLEC18BQ6UXF7 455 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 CYB561A3Q8NBI2 242 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 YIPF6Q96EC8 236 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 NECAP2Q9NVZ3 263 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 TAC3Q9UHF0 121 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 TBX21Q9UL17 535 aa6.96□□□□□ -1.3
LIMCH1-201ENST00000313860 NKX2-8O15522 239 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 CYB561P49447 251 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 CXCR4P61073 352 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 IRF9Q00978 393 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 NSDHLQ15738 373 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF880Q6PDB4 577 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 VKORC1L1Q8N0U8 176 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 SDR9C7Q8NEX9 313 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 P2RY12Q9H244 342 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ZMAT3Q9HA38 289 aaKnown RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 PEF1Q9UBV8 284 aaKnown RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 FAM237AA0A1B0GTK4 181 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 A0A1W2PPI3 338 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 FAM183AA6NL82 134 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 AHSGP02765 367 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 BLVRBP30043 206 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF93P35789 620 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 SRP9P49458 86 aaKnown RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 GSK3BP49841 420 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 PITX1P78337 314 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 FAM71F2Q6NXP2 309 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 RNF180Q86T96 592 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 OR2T4Q8NH00 348 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 OR2V2Q96R30 315 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 PLA2G12AQ9BZM1 189 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 PARLQ9H300 379 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 RHOJQ9H4E5 214 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 PRODH2Q9UF12 536 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 IGHV3OR16-12A0A075B7B8 117 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 HBQ1P09105 142 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 TRGC1P0CF51 173 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 PIPP12273 146 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 HOXD3P31249 432 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 GDNFP39905 211 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 TARBP2Q15633 366 aaKnown RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 CTU2Q2VPK5 515 aaKnown RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 TCTEX1D4Q5JR98 221 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 PLXDC2Q6UX71 529 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 C4orf32Q8N8J7 132 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms