RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TMEM30AQ9NV96 361 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 NUMA1Q14980 2115 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 MPGP29372 298 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 CA13Q8N1Q1 262 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 PRRX2Q99811 253 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 UTP23Q9BRU9 249 aaKnown RBP15.69■□□□□ 0.1
SYNPO-201ENST00000307662 FGF22Q9HCT0 170 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 HMSDA8MTL9 139 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 WDR1O75083 606 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 GRPP07492 148 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 IGFBP6P24592 240 aaPredicted RBP15.69■□□□□ 0.1
SYNPO-201ENST00000307662 TBC1D29Q9UFV1 150 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 PHIPQ8WWQ0 1821 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.69■□□□□ 0.1
SYNPO-201ENST00000307662 EN2P19622 333 aaPredicted RBP15.69■□□□□ 0.1
SYNPO-201ENST00000307662 FPR2P25090 351 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 NOVA1P51513 510 aaKnown RBP15.69■□□□□ 0.1
SYNPO-201ENST00000307662 MRPL58Q14197 206 aaKnown RBP15.69■□□□□ 0.1
SYNPO-201ENST00000307662 LINC00052Q96N35 136 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 VAMP8Q9BV40 100 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 PARD6AQ9NPB6 346 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 EXOGQ9Y2C4 368 aaKnown RBP15.69■□□□□ 0.1
SYNPO-201ENST00000307662 TIMM10BQ9Y5J6 103 aa15.69■□□□□ 0.1
SYNPO-201ENST00000307662 OR2J2O76002 312 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 NRASP01111 189 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 VHLLQ6RSH7 139 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 RABEPKQ7Z6M1 372 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 CNRIP1Q96F85 164 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-201ENST00000307662 SHARPINQ9H0F6 387 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 MTFP1Q9UDX5 166 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 ZNF574Q6ZN55 896 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-201ENST00000307662 SLC38A6Q8IZM9 456 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 AGBL5Q8NDL9 886 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 FAM122AQ96E09 287 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 CIB3Q96Q77 187 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-201ENST00000307662 B9D1Q9UPM9 204 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 SERPINE3A8MV23 424 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 TNFRSF10CO14798 259 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 LIMS3P0CW19 117 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 LIMS4P0CW20 117 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 SUB1P53999 127 aaKnown RBP eCLIP15.68■□□□□ 0.1
SYNPO-201ENST00000307662 RSPO2Q6UXX9 243 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-201ENST00000307662 SAT2Q96F10 170 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-201ENST00000307662 BCAT2O15382 392 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-201ENST00000307662 ICOSLGO75144 302 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 TBXA2RP21731 343 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 INSL4Q14641 139 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 RIMS4Q9H426 269 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-201ENST00000307662 HS3ST3A1Q9Y663 406 aa15.68■□□□□ 0.1
SYNPO-201ENST00000307662 ZNF749O43361 778 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 MBTPS2O43462 519 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 HTRA3P83110 453 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 RPL7L1Q6DKI1 246 aaKnown RBP15.67■□□□□ 0.1
SYNPO-201ENST00000307662 NXPE3Q969Y0 559 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 TRAF4Q9BUZ4 470 aaPredicted RBP15.67■□□□□ 0.1
SYNPO-201ENST00000307662 SLC17A4Q9Y2C5 497 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 FZD6O60353 706 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 TOX4O94842 621 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 HNRNPA3P51991 378 aaKnown RBP15.67■□□□□ 0.1
SYNPO-201ENST00000307662 KIRREL2Q6UWL6 708 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 GTF2H5Q6ZYL4 71 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 SPPL3Q8TCT6 385 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 SLC37A2Q8TED4 501 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 RAB18Q9NP72 206 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 SCN7AQ01118 1682 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 ARL16Q0P5N6 197 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 DHRS2Q13268 280 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 ST8SIA1Q92185 356 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 SLC25A6P12236 298 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 PTHLHP12272 177 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 IL3RAP26951 378 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 OR13H1Q8NG92 308 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 C16orf52Q8NHV5 167 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 TOGARAM1Q9Y4F4 1720 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 A0A0A6YYD5 115 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 PPP1CBP62140 327 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 OR8B8Q15620 311 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 TRIM61Q5EBN2 209 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 BAHD1Q8TBE0 780 aaPredicted RBP15.67■□□□□ 0.1
SYNPO-201ENST00000307662 OBP2AQ9NY56 170 aa15.67■□□□□ 0.1
SYNPO-201ENST00000307662 NHSL1Q5SYE7 1610 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 WNT3P56703 355 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 VN1R2Q8NFZ6 395 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 IGHV3-20A0A0C4DH32 117 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 SLC6A1P30531 599 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 CHRNB4P30926 498 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 RAC1P63000 192 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 NHLRC1Q6VVB1 395 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 ZNF66Q6ZN08 573 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 FAM24BQ8N5W8 94 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 IGHA2P01877 340 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 SLC25A4P12235 298 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 MVDP53602 400 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 GGNBP1Q5YKI7 109 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 RNF165Q6ZSG1 346 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 OR4C5Q8NGB2 326 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 MYEOVQ96EZ4 313 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 MED29Q9NX70 200 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 POLDIP2Q9Y2S7 368 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 NKX6-3A6NJ46 265 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms