RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 SNX5Q9Y5X3 404 aa19.08■□□□□ 0.64
HOXD4-201ENST00000306324 ERCC1P07992 297 aaPredicted RBP19.07■□□□□ 0.64
HOXD4-201ENST00000306324 LIMS3P0CW19 117 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 LIMS4P0CW20 117 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 PAX1P15863 534 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 SELEP16581 610 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 ETV1P50549 477 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 ZNF81P51508 661 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 ART1P52961 327 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 COMMD2Q86X83 199 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 SPRYD4Q8WW59 207 aaPredicted RBP19.07■□□□□ 0.64
HOXD4-201ENST00000306324 RORBQ92753 470 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 SPSB4Q96A44 273 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 ZNF649Q9BS31 505 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 JAM3Q9BX67 310 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 RGCCQ9H4X1 137 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 MOB1AQ9H8S9 216 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 ISG20L2Q9H9L3 353 aaKnown RBP19.07■□□□□ 0.64
HOXD4-201ENST00000306324 G6PC2Q9NQR9 355 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 CYSLTR2Q9NS75 346 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 CGGBP1Q9UFW8 167 aaPredicted RBP19.07■□□□□ 0.64
HOXD4-201ENST00000306324 NUFIP1Q9UHK0 495 aaKnown RBP19.07■□□□□ 0.64
HOXD4-201ENST00000306324 EXOSC1Q9Y3B2 195 aaKnown RBP19.07■□□□□ 0.64
HOXD4-201ENST00000306324 PCDHGB5Q9Y5G0 923 aa19.07■□□□□ 0.64
HOXD4-201ENST00000306324 VPS13CQ709C8 3753 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 PRRC2AP48634 2157 aaKnown RBP19.06■□□□□ 0.64
HOXD4-201ENST00000306324 C17orf100A8MU93 164 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 IQCF6A8MYZ5 107 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 PTGES3LE9PB15 166 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 IGHV4-39P01824 125 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 CFL1P23528 166 aaKnown RBP19.06■□□□□ 0.64
HOXD4-201ENST00000306324 LIPAP38571 399 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 MED21Q13503 144 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 LRRC75A-AS1Q8N1F1 130 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 SYS1Q8N2H4 156 aa19.06■□□□□ 0.64
HOXD4-201ENST00000306324 CHCHD3Q9NX63 227 aaKnown RBP19.06■□□□□ 0.64
HOXD4-201ENST00000306324 ZSCAN5BA6NJL1 495 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 CD300LBA8K4G0 201 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 SPRY3O43610 288 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 LILRA1O75019 489 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 TTRP02766 147 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 FAM3AP98173 230 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 ZMAT1Q5H9K5 638 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 OR8G5Q8NG78 346 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 OR51E1Q8TCB6 317 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 PELI1Q96FA3 418 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 FOXC2Q99958 501 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 SLC22A13Q9Y226 551 aa19.05■□□□□ 0.64
HOXD4-201ENST00000306324 A0A0U1RQV5 110 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 hCG_38984A0A1B0GV85 526 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 DENRO43583 198 aaKnown RBP19.04■□□□□ 0.64
HOXD4-201ENST00000306324 LY6HO94772 140 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 ODF4Q2M2E3 257 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 CATSPERDQ86XM0 798 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 ZNF786Q8N393 782 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 OR56B2PQ8NGI1 322 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 LYZL4Q96KX0 146 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 FKBP14Q9NWM8 211 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 CLEC2DQ9UHP7 191 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 ZNF391Q9UJN7 358 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 TPRKBQ9Y3C4 175 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 CREBBPQ92793 2442 aa19.04■□□□□ 0.64
HOXD4-201ENST00000306324 HTR1AP08908 422 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 CCDC159P0C7I6 412 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 C21orf33P30042 268 aaPredicted RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 MAGEB1P43366 347 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 GSK3AP49840 483 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 EFNA4P52798 201 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 TSTQ16762 297 aaKnown RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 OR2G6Q5TZ20 316 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 TMPRSS11AQ6ZMR5 421 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 Q6ZR03 302 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 ELMOD2Q8IZ81 293 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 KLHL36Q8N4N3 616 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 SOX7Q9BT81 388 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 BARX1Q9HBU1 254 aaPredicted RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 GPR84Q9NQS5 396 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 ZDHHC8Q9ULC8 765 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 CAB39Q9Y376 341 aaPredicted RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 MAST4O15021 2626 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 TPD52L2O43399 206 aaKnown RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 SSX4O60224 188 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 F12P00748 615 aaPredicted RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 IGHV1-46P01743 117 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 CCL8P80075 99 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 WDR38Q5JTN6 314 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 PRSS35Q8N3Z0 413 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 OR2Z1Q8NG97 314 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 NEU4Q8WWR8 484 aaPredicted RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 MYDGFQ969H8 173 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 RNF166Q96A37 237 aaPredicted RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 FAM71F1Q96KD3 344 aaPredicted RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 TMEM100Q9NV29 134 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 PAK1IP1Q9NWT1 392 aaPredicted RBP19.03■□□□□ 0.64
HOXD4-201ENST00000306324 UBAP1Q9NZ09 502 aa19.03■□□□□ 0.64
HOXD4-201ENST00000306324 P2RY10O00398 339 aa19.02■□□□□ 0.63
HOXD4-201ENST00000306324 CDK1P06493 297 aa19.02■□□□□ 0.63
HOXD4-201ENST00000306324 DDOSTP39656 456 aa19.02■□□□□ 0.63
HOXD4-201ENST00000306324 GBX2P52951 348 aaPredicted RBP19.02■□□□□ 0.63
HOXD4-201ENST00000306324 PCGF3Q3KNV8 242 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms