RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 NSD1Q96L73 2696 aaPredicted RBP11.32□□□□□ -0.6
VPS28-201ENST00000292510 LRP5LA4QPB2 252 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 F5H5P2 479 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 WNT9BO14905 357 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 CASQ2O14958 399 aaPredicted RBP11.32□□□□□ -0.6
VPS28-201ENST00000292510 PPIHO43447 177 aaKnown RBP11.32□□□□□ -0.6
VPS28-201ENST00000292510 CA6P23280 308 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 TNFSF4P23510 183 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 GPR6P46095 362 aaPredicted RBP11.32□□□□□ -0.6
VPS28-201ENST00000292510 MTNR1AP48039 350 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 RIDAP52758 137 aaKnown RBP11.32□□□□□ -0.6
VPS28-201ENST00000292510 MRPS11P82912 194 aaKnown RBP11.32□□□□□ -0.6
VPS28-201ENST00000292510 FAM3AP98173 230 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 MFGE8Q08431 387 aaPredicted RBP11.32□□□□□ -0.6
VPS28-201ENST00000292510 POU4F2Q12837 409 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 TMED1Q13445 227 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 AVPI1Q5T686 147 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 MEDAGQ5VYS4 303 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 DEGS2Q6QHC5 323 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 PACRGLQ8N7B6 248 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 ZNF540Q8NDQ6 660 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 ZNF555Q8NEP9 628 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 OR10H4Q8NGA5 316 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 OR13G1Q8NGZ3 307 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 RHOXF1Q8NHV9 184 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 APH1BQ8WW43 257 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 CYGBQ8WWM9 190 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 CCL17Q92583 94 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 LYZL4Q96KX0 146 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 OR2V2Q96R30 315 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 MNTQ99583 582 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 SOX7Q9BT81 388 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 NIPAL2Q9H841 368 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 AMBNQ9NP70 447 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 TMEM100Q9NV29 134 aa11.32□□□□□ -0.6
VPS28-201ENST00000292510 MRM2Q9UI43 246 aaKnown RBP11.32□□□□□ -0.6
VPS28-201ENST00000292510 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.32□□□□□ -0.63e-6■□□□□ 9.1
VPS28-201ENST00000292510 NF1P21359 2839 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 hCG_38984A0A1B0GV85 526 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 TMEM269A0A1B0GVZ9 245 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 PHYHO14832 338 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 ZNF254O75437 659 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 PNPP00491 289 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 IL2RGP31785 369 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 IL5RAQ01344 420 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 MVKQ03426 396 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 ZNF85Q03923 595 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 ZNF91Q05481 1191 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 TMEM249Q2WGJ8 235 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 HFEQ30201 348 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 OR52H1Q8NGJ2 320 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 LGALS12Q96DT0 336 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 MEGF10Q96KG7 1140 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 PBOV1Q9GZY1 135 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 OPA3Q9H6K4 179 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 PPP1R3EQ9H7J1 279 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 IL19Q9UHD0 177 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 GTF2A1LQ9UNN4 478 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 ABCA1O95477 2261 aa11.31□□□□□ -0.6
VPS28-201ENST00000292510 SVEP1Q4LDE5 3571 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 A0A1B0GWJ7 208 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 J3QRE1 110 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 SRSF10O75494 262 aaKnown RBP11.3□□□□□ -0.6
VPS28-201ENST00000292510 RPP14O95059 124 aaKnown RBP11.3□□□□□ -0.6
VPS28-201ENST00000292510 HEXAP06865 529 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 TACSTD2P09758 323 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 OR2T7P0C7T2 308 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 DCTDP32321 178 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 GSK3AP49840 483 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 TMEM33P57088 247 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 ADARB1P78563 741 aaKnown RBP11.3□□□□□ -0.6
VPS28-201ENST00000292510 SLC34A1Q06495 639 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 EGR3Q06889 387 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 MAB21L1Q13394 359 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 SMN1Q16637 294 aaKnown RBP11.3□□□□□ -0.6
VPS28-201ENST00000292510 ZNF691Q5VV52 312 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 YIPF7Q8N8F6 280 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 OR2T27Q8NH04 317 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 NRG4Q8WWG1 115 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 ADAT1Q9BUB4 502 aaKnown RBP11.3□□□□□ -0.6
VPS28-201ENST00000292510 C8orf4Q9NR00 106 aa11.3□□□□□ -0.6
VPS28-201ENST00000292510 NIPBLQ6KC79 2804 aaeCLIP11.3□□□□□ -0.6
VPS28-201ENST00000292510 SONP18583 2426 aaKnown RBP11.29□□□□□ -0.6
VPS28-201ENST00000292510 CLDN25C9JDP6 229 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 LOC110117498-PIK3R3F6TDL0 507 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 MPZL2O60487 215 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 WBP4O75554 376 aaKnown RBP11.29□□□□□ -0.6
VPS28-201ENST00000292510 KRT8P05787 483 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 IGHV4-31P0DP07 118 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 DBTP11182 482 aaKnown RBP11.29□□□□□ -0.6
VPS28-201ENST00000292510 TNFRSF1AP19438 455 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 ACKR3P25106 362 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 CHN2P52757 468 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 OR8G1Q15617 311 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 ZNF829Q3KNS6 432 aaPredicted RBP11.29□□□□□ -0.6
VPS28-201ENST00000292510 TP53I3Q53FA7 332 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 ZNF684Q5T5D7 378 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 PRAMEF6Q5VXH4 476 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 TTC23Q5W5X9 447 aa11.29□□□□□ -0.6
VPS28-201ENST00000292510 ZNF771Q7L3S4 317 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms