RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CXCR1P25024 350 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 FCGR2CP31995 323 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 TMEM33P57088 247 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 GUK1Q16774 197 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 SP6Q3SY56 376 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 C14orf28Q4W4Y0 310 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 GKN2Q86XP6 184 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 FAM71E2Q8N5Q1 922 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 REEP6Q96HR9 211 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 SMIM8Q96KF7 97 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 RARRES2Q99969 163 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 SH3BGRL3Q9H299 93 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 SMOC1Q9H4F8 434 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 FAM60AQ9NP50 221 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 HRASLS2Q9NWW9 162 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 CXorf51AA0A1B0GTR3 108 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 MFNGO00587 321 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 TNFSF12O43508 249 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 CAMLGP49069 296 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 SLC25A1P53007 311 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 TMEM128Q5BJH2 165 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 PRSS54Q6PEW0 395 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 C17orf78Q8N4C9 275 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 TERB2Q8NHR7 220 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 OR1E3Q8WZA6 343 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 ERGIC1Q969X5 290 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 SCARF2Q96GP6 870 aaPredicted RBP12.8□□□□□ -0.36
SDC1-201ENST00000254351 OCSTAMPQ9BR26 566 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 MTIF3Q9H2K0 278 aaKnown RBP12.8□□□□□ -0.36
SDC1-201ENST00000254351 RNF122Q9H9V4 155 aa12.8□□□□□ -0.36
SDC1-201ENST00000254351 CSTBP04080 98 aaKnown RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 MDKP21741 143 aaPredicted RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 RPL12P30050 165 aaKnown RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 OR3A2P47893 321 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 INSM1Q01101 510 aaPredicted RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 USF2Q15853 346 aaPredicted RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 TMEM244Q5VVB8 128 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 LRRC75AQ8NAA5 344 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 MFSD8Q8NHS3 518 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 AQP3Q92482 292 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 SGK3Q96BR1 496 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 VSTM2LQ96N03 204 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 TCEAL7Q9BRU2 100 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 APOOQ9BUR5 198 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 TMPRSS5Q9H3S3 457 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 ELL3Q9HB65 397 aaPredicted RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 FLVCR1Q9Y5Y0 555 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 PRSS38A1L453 326 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 RAMP1O60894 148 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 OR2C1O95371 312 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 BCKDHBP21953 392 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 ADAT3Q96EY9 351 aaPredicted RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 POM121Q96HA1 1249 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 LRFN5Q96NI6 719 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 OR8D2Q9GZM6 311 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 RP1P56715 2156 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 IFITM10A6NMD0 228 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 GATCO43716 136 aaKnown RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 IGHV2-5P01817 119 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 MELTFP08582 738 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 ASAH2BP0C7U1 165 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 IL11P20809 199 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 SUPT4H1P63272 117 aaKnown RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 RSPO4Q2I0M5 234 aaPredicted RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 WBP2NLQ6ICG8 309 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 OR9K2Q8NGE7 335 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 CTHRC1Q96CG8 243 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 GPER1Q99527 375 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 GPR61Q9BZJ8 451 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 NMES1Q9C002 83 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 SLCO5A1Q9H2Y9 848 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 KIR3DX1Q9H7L2 352 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 KCNJ16Q9NPI9 418 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 PNO1Q9NRX1 252 aaKnown RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 ZNF701Q9NV72 531 aaPredicted RBP12.79□□□□□ -0.36
SDC1-201ENST00000254351 OR52A1Q9UKL2 312 aa12.79□□□□□ -0.36
SDC1-201ENST00000254351 ZNF729A6NN14 1252 aaPredicted RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 NSA2O95478 260 aaKnown RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 AMY2BP19961 511 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 KLK2P20151 261 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 ZNF84P51523 738 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 SRSF4Q08170 494 aaKnown RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 KCTD18Q6PI47 426 aaPredicted RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 BTNL8Q6UX41 500 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 SPNS3Q6ZMD2 512 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 ATG4DQ86TL0 474 aaPredicted RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 WFIKKN2Q8TEU8 576 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 OR10A5Q9H207 317 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 TIMM10BQ9Y5J6 103 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 KPTNQ9Y664 436 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 A0A1B0GTQ1 180 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 PPIHO43447 177 aaKnown RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 ZNF217O75362 1048 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 QDPRP09417 244 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 SMIM10L1P0DMW3 83 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 HKR1P10072 659 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 CX3CR1P49238 355 aa12.78□□□□□ -0.36
SDC1-201ENST00000254351 DHPSP49366 369 aaPredicted RBP12.78□□□□□ -0.36
SDC1-201ENST00000254351 CYCSP99999 105 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms