RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MAGEA5P43359 124 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 AGFG1P52594 562 aaKnown RBP12.15□□□□□ -0.46
LDLR-201ENST00000252444 SPINK14Q6IE38 97 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 C20orf141Q9NUB4 165 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 A0A0G2JMP0 313 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 IL13RA1P78552 427 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 GK2Q14410 553 aaPredicted RBP12.15□□□□□ -0.46
LDLR-201ENST00000252444 PLGLAQ15195 96 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 OR4M2Q8NGB6 313 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 ZNF775Q96BV0 537 aaPredicted RBP12.15□□□□□ -0.46
LDLR-201ENST00000252444 A0A0D9SG52 128 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 RSPO4Q2I0M5 234 aaPredicted RBP12.15□□□□□ -0.46
LDLR-201ENST00000252444 SLC25A35Q3KQZ1 300 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 CBLN3Q6UW01 205 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 RFPL4BQ6ZWI9 263 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 OR4D6Q8NGJ1 314 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 OR10J5Q8NHC4 309 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 PELI1Q96FA3 418 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 METTL17Q9H7H0 456 aaPredicted RBP12.15□□□□□ -0.46
LDLR-201ENST00000252444 FBXO34Q9NWN3 711 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 NLKQ9UBE8 527 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 TRIM64A6NGJ6 449 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 PRR19A6NJB7 356 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 FUT4P22083 530 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 LGALS4P56470 323 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 LRRC10Q5BKY1 277 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 FAM71CQ8NEG0 241 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 RNF122Q9H9V4 155 aa12.15□□□□□ -0.46
LDLR-201ENST00000252444 DOCK6Q96HP0 2047 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 TMEM30CPA0ZSE6 113 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 BTBD17A6NE02 478 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 LIMS1P48059 325 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 F2RL1P55085 397 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 FAM27BQ5VT28 67 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 KANSL1Q7Z3B3 1105 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 TMEM229BQ8NBD8 167 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 C1orf162Q8NEQ5 155 aaPredicted RBP12.14□□□□□ -0.47
LDLR-201ENST00000252444 BBS1Q8NFJ9 593 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 OR51A4Q8NGJ6 313 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 RNF133Q8WVZ7 376 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 PTX4Q96A99 478 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 MPPED1O15442 326 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 XRCC3O43542 346 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 PCMT1P22061 227 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 TSEN54Q7Z6J9 526 aaKnown RBP12.14□□□□□ -0.47
LDLR-201ENST00000252444 OR10R2Q8NGX6 335 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 TAAR6Q96RI8 345 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 LIN7CQ9NUP9 197 aaKnown RBP12.14□□□□□ -0.47
LDLR-201ENST00000252444 PCDHGA9Q9Y5G4 932 aaKnown RBP12.14□□□□□ -0.47
LDLR-201ENST00000252444 CD83Q01151 205 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 SSX1Q16384 188 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 TMEM30BQ3MIR4 351 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 C20orf196Q8IYI0 205 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 DYNC2LI1Q8TCX1 351 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 ELMOD3Q96FG2 381 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 TRMT61AQ96FX7 289 aaKnown RBP12.14□□□□□ -0.47
LDLR-201ENST00000252444 ADAT1Q9BUB4 502 aaKnown RBP12.14□□□□□ -0.47
LDLR-201ENST00000252444 IGHV3-15A0A0B4J1V0 119 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 A0A1W2PQ09 198 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 CTSSP25774 331 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 PPP1CBP62140 327 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 MESTQ5EB52 335 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 SFRP4Q6FHJ7 346 aaPredicted RBP12.14□□□□□ -0.47
LDLR-201ENST00000252444 VHLLQ6RSH7 139 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 ARRDC1Q8N5I2 433 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 FAM210AQ96ND0 272 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 ALKBH3Q96Q83 286 aaPredicted RBP12.14□□□□□ -0.47
LDLR-201ENST00000252444 C12orf4Q9NQ89 552 aa12.14□□□□□ -0.47
LDLR-201ENST00000252444 OR6C68A6NDL8 312 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 ZNF732B4DXR9 585 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 ARPC1BO15143 372 aaKnown RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 CD59P13987 128 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 ZNF239Q16600 458 aaKnown RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 PABPC1L2AQ5JQF8 200 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 TOMM40LQ969M1 308 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 OR51B6Q9H340 312 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 SLA2Q9H6Q3 261 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 AMMECR1Q9Y4X0 333 aaPredicted RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 LOC100509620A0A075B734 347 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 TMEM229AB2RXF0 380 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 C17orf112F2Z3M2 114 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 OR51D1Q8NGF3 324 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 ABHD5Q8WTS1 349 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 ZNF275Q9NSD4 429 aaPredicted RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 MASP2O00187 686 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 GPX5O75715 221 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 ZNF32P17041 273 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 CDKN2AP42771 156 aaKnown RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 SUB1P53999 127 aaKnown RBP eCLIP12.13□□□□□ -0.479e-7■■■□□ 17.7
LDLR-201ENST00000252444 RAB11AP62491 216 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 OR2AE1Q8NHA4 323 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 HELZP42694 1942 aaKnown RBP12.13□□□□□ -0.47
LDLR-201ENST00000252444 A0A0U1RQV5 110 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 C16orf97H3BN30 126 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 GOSR2O14653 212 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 RAB7AP51149 207 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 MMP16P51512 607 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 BLOC1S1P78537 153 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 APOOLQ6UXV4 268 aa12.13□□□□□ -0.47
LDLR-201ENST00000252444 FAM214BQ7L5A3 538 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms