RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 C19orf48Q6RUI8 117 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 GLIPR1L1Q6UWM5 242 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 OR10P1Q8NGE3 313 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 OR51H1Q8NH63 302 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 OLIG1Q8TAK6 271 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 FAM213BQ8TBF2 198 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 BCL7CQ8WUZ0 217 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM106AQ96A25 262 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 MED30Q96HR3 178 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 LRFN3Q9BTN0 628 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 THBS1P07996 1170 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 FGF2P09038 288 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 HSD17B1P14061 328 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 GGTLC2Q14390 218 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 TCEAL1Q15170 157 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 SHBQ15464 509 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF260Q3ZCT1 412 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM196Q5HYL7 178 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 RNF220Q5VTB9 566 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 DRAM2Q6UX65 266 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 APOOLQ6UXV4 268 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 KIAA1958Q8N8K9 716 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 OR8U1Q8NH10 309 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 PTPMT1Q8WUK0 201 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 NMNAT3Q96T66 252 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 OR6C3Q9NZP0 311 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 STRAPQ9Y3F4 350 aaKnown RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 TUBGCP6Q96RT7 1819 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 TMPRSS2O15393 492 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 TOX3O15405 576 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ADAM11O75078 769 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 CD68P34810 354 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 PPP1CCP36873 323 aaKnown RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 RFPL4BQ6ZWI9 263 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 DCTN5Q9BTE1 182 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 DPCDQ9BVM2 203 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 FOXJ3Q9UPW0 622 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 POM121BA6NF01 834 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 SYT5O00445 386 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 AGPAT2O15120 278 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 HTN1P15515 57 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 RPA2P15927 270 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 GLYATL3Q5SZD4 288 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 SPATA46Q5T0L3 261 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 TCTN3Q6NUS6 607 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 FAHD1Q6P587 224 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 MDGA2Q7Z553 956 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 SLC25A42Q86VD7 318 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 IGDCC3Q8IVU1 814 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ANKRD53Q8N9V6 530 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 SLC25A40Q8TBP6 338 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ISOC1Q96CN7 298 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 SEC22CQ9BRL7 303 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 GLIPR2Q9H4G4 154 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 CNOT2Q9NZN8 540 aaKnown RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 NLKQ9UBE8 527 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 HCSTQ9UBK5 93 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ASH2LQ9UBL3 628 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 MYO7BQ6PIF6 2116 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 NHSL1Q5SYE7 1610 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 APOC3P02656 99 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 OR5H8P0DN80 308 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 IL9P15248 144 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 G0S2P27469 103 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 AGERQ15109 404 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ACER2Q5QJU3 275 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 LAMTOR1Q6IAA8 161 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 OR13J1Q8NGT2 312 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 KCTD12Q96CX2 325 aaKnown RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 EMC6Q9BV81 110 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 FUNDC2Q9BWH2 189 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 GABARAPL1Q9H0R8 117 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 EXOSC3Q9NQT5 275 aaKnown RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 MBNL1Q9NR56 388 aaKnown RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 AJAP1Q9UKB5 411 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 COLQQ9Y215 455 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 GPR55Q9Y2T6 319 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 WDR1O75083 606 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SNAPINO95295 136 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ACP1P24666 158 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 KIR2DL1P43626 348 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 KIR2DL2P43627 348 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 KIR3DL2P43630 455 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ZFP36L2P47974 494 aaKnown RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 JAG1P78504 1218 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 NAAAQ02083 359 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 MGAT3Q09327 533 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 KDM8Q8N371 416 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 WDTC1Q8N5D0 677 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 GPR32P1Q8NGA4 272 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 CT55Q8WUE5 264 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 PHYHIPQ92561 330 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 TNFRSF13CQ96RJ3 184 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 DDOQ99489 341 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ACTR3CQ9C0K3 210 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 AUP1Q9Y679 476 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ANKRD36A6QL64 1941 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 C16orf97H3BN30 126 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 B4GALT1P15291 398 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms