RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 COMMD3-BMI1R4GMX3 469 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 SLC16A6O15403 523 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 GLCEO94923 617 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 ACSM4P0C7M7 580 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 RPS7P62081 194 aaKnown RBP16.29■□□□□ 0.2
CLN3-260ENST00000637578 TNFAIP6P98066 277 aaPredicted RBP16.29■□□□□ 0.2
CLN3-260ENST00000637578 APOFQ13790 326 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 HLXQ14774 488 aaPredicted RBP16.29■□□□□ 0.2
CLN3-260ENST00000637578 AADACL4Q5VUY2 407 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 ZNF555Q8NEP9 628 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 OR10S1Q8NGN2 331 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 CYGBQ8WWM9 190 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 CCL17Q92583 94 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 WDR76Q9H967 626 aa16.29■□□□□ 0.2
CLN3-260ENST00000637578 DNHD1Q96M86 4753 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 PSKH1P11801 424 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 ZNF823P16415 610 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 BLVRAP53004 296 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 MVKQ03426 396 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 AVPI1Q5T686 147 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 RAB1CQ92928 201 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 DDX28Q9NUL7 540 aaKnown RBP16.28■□□□□ 0.2
CLN3-260ENST00000637578 PTTG3PQ9NZH4 202 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 IL19Q9UHD0 177 aa16.28■□□□□ 0.2
CLN3-260ENST00000637578 A0A1B0GWJ7 208 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 CCDC182A6NF36 153 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 MSMBP08118 114 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 SRD5A1P18405 259 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 HNF1AP20823 631 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 GSTT1P30711 240 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 OTX1P32242 354 aaPredicted RBP16.27■□□□□ 0.2
CLN3-260ENST00000637578 RPS27P42677 84 aaKnown RBP16.27■□□□□ 0.2
CLN3-260ENST00000637578 SLC3A1Q07837 685 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 TEX30Q5JUR7 227 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 SLC35D3Q5M8T2 416 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 NXNL2Q5VZ03 156 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 IL17RELQ6ZVW7 336 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 DHRSXQ8N5I4 330 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 OR8G5Q8NG78 346 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 OR2Z1Q8NG97 314 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 TRUB1Q8WWH5 349 aaKnown RBP16.27■□□□□ 0.2
CLN3-260ENST00000637578 TIMD4Q96H15 378 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 ADI1Q9BV57 179 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 ZNF665Q9H7R5 613 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 DNAJC27Q9NZQ0 273 aa16.27■□□□□ 0.2
CLN3-260ENST00000637578 F5H5K5 113 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 CLIC3O95833 236 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 AQP4P55087 323 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 ADARB1P78563 741 aaKnown RBP16.26■□□□□ 0.19
CLN3-260ENST00000637578 NAA40Q86UY6 237 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 TIGD4Q8IY51 512 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 ENTHD1Q8IYW4 607 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 TMEM186Q96B77 213 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 ZNF582Q96NG8 517 aaPredicted RBP16.26■□□□□ 0.19
CLN3-260ENST00000637578 TEAD3Q99594 435 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 VCX3BQ9H321 246 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 MARCH7Q9H992 704 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 H2AFY2Q9P0M6 372 aaPredicted RBP16.26■□□□□ 0.19
CLN3-260ENST00000637578 AASSQ9UDR5 926 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 COL6A5A8TX70 2615 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 IQCF6A8MYZ5 107 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 SELENOFO60613 162 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 IGHV2-5P01817 119 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 TNFRSF1AP19438 455 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 PCMT1P22061 227 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 TNFSF4P23510 183 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 ENTPD1P49961 510 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 SNRPGP62308 76 aaKnown RBP16.26■□□□□ 0.19
CLN3-260ENST00000637578 TTC23Q5W5X9 447 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 OR2T2Q6IF00 324 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 MEPCEQ7L2J0 689 aaKnown RBP16.26■□□□□ 0.19
CLN3-260ENST00000637578 GLCCI1Q86VQ1 547 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 ERI1Q8IV48 349 aaKnown RBP16.26■□□□□ 0.19
CLN3-260ENST00000637578 GID4Q8IVV7 300 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 ZNF283Q8N7M2 679 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 INTS14Q96SY0 518 aa16.26■□□□□ 0.19
CLN3-260ENST00000637578 MXRA5Q9NR99 2828 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 ZNF593O00488 134 aaPredicted RBP16.25■□□□□ 0.19
CLN3-260ENST00000637578 SPARCP09486 303 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 GABRB1P18505 474 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 CAPGP40121 348 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 TPTEP56180 551 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 GK2Q14410 553 aaPredicted RBP16.25■□□□□ 0.19
CLN3-260ENST00000637578 LCN1P1Q5VSP4 162 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 OR6N2Q8NGY6 317 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 OR13G1Q8NGZ3 307 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 OR51F2Q8NH61 342 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 SLC30A2Q9BRI3 323 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 TMEM106BQ9NUM4 274 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 HIF1ANQ9NWT6 349 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 DCAF16Q9NXF7 216 aa16.25■□□□□ 0.19
CLN3-260ENST00000637578 TANC2Q9HCD6 1990 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 SLC22A31A6NKX4 558 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 H0YJX3 145 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 NAA10P41227 235 aaPredicted RBP16.24■□□□□ 0.19
CLN3-260ENST00000637578 SLC25A30Q5SVS4 291 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 ZNF691Q5VV52 312 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 DPY19L4Q7Z388 723 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 DCXRQ7Z4W1 244 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 OR5AS1Q8N127 324 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms