RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 RHBDD3Q9Y3P4 386 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 FLVCR1Q9Y5Y0 555 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 C7orf66A4D0T2 115 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 RBBP9O75884 186 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 CASRP41180 1078 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 C1orf100Q5SVJ3 147 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 ZBTB37Q5TC79 503 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 FOXL2NBQ6ZUU3 175 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 IL22RA1Q8N6P7 574 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 NKAIN3Q8N8D7 197 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 PNPLA2Q96AD5 504 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 ZNF845Q96IR2 970 aaPredicted RBP13.78□□□□□ -0.2
CLN3-251ENST00000636853 GPR137Q96N19 417 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 ARPC5LQ9BPX5 153 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 C20orf85Q9H1P6 137 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 SLC17A5Q9NRA2 495 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 ZNF716A6NP11 495 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 F5H5K5 113 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 CELA3AP09093 270 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 GFRA1P56159 465 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 GRB2P62993 217 aaKnown RBP13.78□□□□□ -0.2
CLN3-251ENST00000636853 FCN2Q15485 313 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 OR1C1Q15619 314 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 GSG1Q2KHT4 349 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 ZNF627Q7L945 461 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 ADGRE4PQ86SQ3 457 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 SLC51BQ86UW2 128 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 SLC38A6Q8IZM9 456 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 C9orf62Q8N4C0 152 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 GJC3Q8NFK1 279 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 OR5D14Q8NGL3 314 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 GIMAP1Q8WWP7 306 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 SORCS2Q96PQ0 1159 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 FAM173AQ9BQD7 235 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 TMEM138Q9NPI0 162 aa13.78□□□□□ -0.2
CLN3-251ENST00000636853 ELF5Q9UKW6 265 aaPredicted RBP13.78□□□□□ -0.2
CLN3-251ENST00000636853 MRPS18CQ9Y3D5 142 aaKnown RBP13.78□□□□□ -0.2
CLN3-251ENST00000636853 SMLR1H3BR10 107 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 H7C417 338 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 LDLRAD4O15165 306 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 TPPPO94811 219 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 ZNF20P17024 532 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 ZNF84P51523 738 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 PCGF3Q3KNV8 242 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.77□□□□□ -0.21
CLN3-251ENST00000636853 RNF144BQ7Z419 303 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 SULF2Q8IWU5 870 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 IQCF2Q8IXL9 164 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 NKD1Q969G9 470 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 DACT3Q96B18 629 aaPredicted RBP13.77□□□□□ -0.21
CLN3-251ENST00000636853 INTS12Q96CB8 462 aaKnown RBP13.77□□□□□ -0.21
CLN3-251ENST00000636853 FBXO17Q96EF6 278 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 SPACA5Q96QH8 159 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 MED28Q9H204 178 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 OR10A4Q9H209 315 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 PARD6AQ9NPB6 346 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 MTFP1Q9UDX5 166 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 SPEF1Q9Y4P9 236 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 HSPB11Q9Y547 144 aa13.77□□□□□ -0.21
CLN3-251ENST00000636853 NAP1L6A6NFF2 107 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 RAB3AP20336 220 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 PSMB1P20618 241 aaKnown RBP13.76□□□□□ -0.21
CLN3-251ENST00000636853 MOGAT2Q3SYC2 334 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 ATP1A1-AS1Q5TC04 95 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 OLFML2AQ68BL7 652 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 OR56B4Q8NH76 319 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 FOXRED1Q96CU9 486 aaPredicted RBP13.76□□□□□ -0.21
CLN3-251ENST00000636853 MS4A3Q96HJ5 214 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 OR51J1Q9H342 316 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 ZMAT3Q9HA38 289 aaKnown RBP13.76□□□□□ -0.21
CLN3-251ENST00000636853 CRLF2Q9HC73 371 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 AKR7A2O43488 359 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 GABRA1P14867 456 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 PRKACBP22694 351 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 PRSS3P35030 304 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 SLC6A9P48067 706 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 AIMP2Q13155 320 aaKnown RBP13.76□□□□□ -0.21
CLN3-251ENST00000636853 TGIF1Q15583 401 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 ST3GAL2Q16842 350 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 RSPO4Q2I0M5 234 aaPredicted RBP13.76□□□□□ -0.21
CLN3-251ENST00000636853 AAED1Q7RTV5 226 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 ABHD3Q8WU67 409 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 PGAM5Q96HS1 289 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 ALKBH3Q96Q83 286 aaPredicted RBP13.76□□□□□ -0.21
CLN3-251ENST00000636853 ZNF703Q9H7S9 590 aaPredicted RBP13.76□□□□□ -0.21
CLN3-251ENST00000636853 ABI3Q9P2A4 366 aa13.76□□□□□ -0.21
CLN3-251ENST00000636853 FAM166BA8MTA8 275 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 SLC22A5O76082 557 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 DBHP09172 617 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 VEGFCP49767 419 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 SRYQ05066 204 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 RSPO1Q2MKA7 263 aaPredicted RBP13.75□□□□□ -0.21
CLN3-251ENST00000636853 LINC00303Q3SY05 128 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 DMRTC1Q5HYR2 192 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 ELFN2Q5R3F8 820 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 ABLIM2Q6H8Q1 611 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 ZNF529Q6P280 563 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 PLXDC2Q6UX71 529 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 DEFB124Q8NES8 71 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 OR11H7Q8NGC8 314 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms