RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 EYSQ5T1H1 3165 aa11.32□□□□□ -0.6
LINC00540-203ENST00000631321 RNF222A6NCQ9 220 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 OR2AT4A6NND4 320 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 EFSO43281 561 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 GNB3P16520 340 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 CCL1P22362 96 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 PRKACBP22694 351 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 HRH1P35367 487 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF93P35789 620 aaPredicted RBP11.31□□□□□ -0.6
LINC00540-203ENST00000631321 CLRN1P58418 232 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 SHBQ15464 509 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 SLC22A6Q4U2R8 563 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 OR52W1Q6IF63 320 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 MOB3CQ70IA8 216 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 ANGPTL5Q86XS5 388 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 OR6X1Q8NH79 312 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 ST8SIA4Q92187 359 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 C1orf147Q96MC9 270 aaPredicted RBP11.31□□□□□ -0.6
LINC00540-203ENST00000631321 PHB2Q99623 299 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 LPAR5Q9H1C0 372 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 IFT46Q9NQC8 304 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 GPR160Q9UJ42 338 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 KANTRA0A1W2PQU2 76 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 LGALS8O00214 317 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 ZFAND5O76080 213 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 TIAF1O95411 115 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF20P17024 532 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 EMP2P54851 167 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF385CQ66K41 422 aaPredicted RBP11.31□□□□□ -0.6
LINC00540-203ENST00000631321 AWAT2Q6E213 333 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 ACOT7LQ6ZUV0 252 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 CPEB2Q7Z5Q1 589 aaKnown RBP11.31□□□□□ -0.6
LINC00540-203ENST00000631321 HOGA1Q86XE5 327 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 PPP1R1CQ8WVI7 109 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 VRK1Q99986 396 aaPredicted RBP11.31□□□□□ -0.6
LINC00540-203ENST00000631321 PDCD10Q9BUL8 212 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 SELENOIQ9C0D9 397 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 FN3KRPQ9HA64 309 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 BARX1Q9HBU1 254 aaPredicted RBP11.31□□□□□ -0.6
LINC00540-203ENST00000631321 MYOTQ9UBF9 498 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 UNC13CQ8NB66 2214 aa11.31□□□□□ -0.6
LINC00540-203ENST00000631321 A0A0A6YYD4 124 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 DBX1A6NMT0 343 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 CCSO14618 274 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 DKK1O94907 266 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 DUS4LO95620 317 aaKnown RBP11.3□□□□□ -0.6
LINC00540-203ENST00000631321 GSTP1P09211 210 aaKnown RBP11.3□□□□□ -0.6
LINC00540-203ENST00000631321 PNLIPP16233 465 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 ATP1B3P54709 279 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 IL13RA1P78552 427 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 DCDP81605 110 aaKnown RBP11.3□□□□□ -0.6
LINC00540-203ENST00000631321 TAF13Q15543 124 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 HIST3H3Q16695 136 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 PGAP1Q75T13 922 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 OR2M3Q8NG83 312 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 OR10G3Q8NGC4 313 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 OR2AJ1Q8NGZ0 328 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 MRPS24Q96EL2 167 aaKnown RBP11.3□□□□□ -0.6
LINC00540-203ENST00000631321 TMEM185BQ9H7F4 350 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 PNRC2Q9NPJ4 139 aaKnown RBP11.3□□□□□ -0.6
LINC00540-203ENST00000631321 TRIOO75962 3097 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 ABCA7Q8IZY2 2146 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 LOC102725191A0A1B0GVB3 256 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 CEACAM18A8MTB9 384 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 LIPCP11150 499 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 GABREP78334 506 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 MFAP5Q13361 173 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 STPG2Q8N412 459 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 RELL2Q8NC24 303 aaPredicted RBP11.3□□□□□ -0.6
LINC00540-203ENST00000631321 OR8B12Q8NGG6 310 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 SSC4DQ8WTU2 575 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 FBXW5Q969U6 566 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 LDAHQ9H6V9 325 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 METTL7AQ9H8H3 244 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 ATXN7L1Q9ULK2 861 aaPredicted RBP11.3□□□□□ -0.6
LINC00540-203ENST00000631321 MRPS28Q9Y2Q9 187 aaKnown RBP11.3□□□□□ -0.6
LINC00540-203ENST00000631321 ADAMTS9Q9P2N4 1935 aa11.3□□□□□ -0.6
LINC00540-203ENST00000631321 SULT2B1O00204 365 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 DCNP07585 359 aaKnown RBP11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF17P17021 662 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 DLSTP36957 453 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF121P58317 390 aaPredicted RBP11.29□□□□□ -0.6
LINC00540-203ENST00000631321 STARD6P59095 220 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 TAS2R31P59538 309 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 EIF3IQ13347 325 aaKnown RBP11.29□□□□□ -0.6
LINC00540-203ENST00000631321 VAX1Q5SQQ9 334 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 PTCRAQ6ISU1 281 aaPredicted RBP11.29□□□□□ -0.6
LINC00540-203ENST00000631321 GLIPR1L1Q6UWM5 242 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 RNF144BQ7Z419 303 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 SPEM1Q8N4L4 309 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 FADS6Q8N9I5 356 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ADAD2Q8NCV1 583 aaKnown RBP11.29□□□□□ -0.6
LINC00540-203ENST00000631321 KCNG3Q8TAE7 436 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ELP5Q8TE02 316 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 SEC22AQ96IW7 307 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 OXGR1Q96P68 337 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 OR6C1Q96RD1 312 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 NICN1Q9BSH3 213 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 POLR1DQ9Y2S0 133 aa11.29□□□□□ -0.6
LINC00540-203ENST00000631321 ZNF814B7Z6K7 855 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms